View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1978_high_1 (Length: 543)
Name: NF1978_high_1
Description: NF1978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1978_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 99 - 528
Target Start/End: Complemental strand, 38136459 - 38136031
Alignment:
| Q |
99 |
tatagaatgagtttttatctcaaacagtttctctattatagataagaaggttctcccctttattagaaagttcattgctttctggtaatgatggtgtcgt |
198 |
Q |
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| T |
38136459 |
tatagaatgagtttt-atctcaaacagtttctctattatagataagaaggttctcccctttattagaaagttcattgctttctggtaatgatggtgtcgt |
38136361 |
T |
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| Q |
199 |
ctcggatgagtggaaaacagttcctgatatttggagaacttctgctgagaagtatggtgataaaattgctctcatagatccatatcatgatcctccttca |
298 |
Q |
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| T |
38136360 |
ctcggatgagtggaaaacagttcctgatatttggagaagttctgctgagaagtatggtgataaaattgctctcatagatccatatcatgatcctccttca |
38136261 |
T |
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| Q |
299 |
attatgacttacaaacaggtttggtttgtttctttccaactaattttaccaagtgaattagaagatttattgaaggactgcaaacaattttcaaattatt |
398 |
Q |
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| T |
38136260 |
actatgacttacaaacaggtttggtttgtttctttccaactaattttaccatgtgaattagaagatttattgaaggactgcaaacaattttcaaattatt |
38136161 |
T |
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| Q |
399 |
tatattcttacgagcttgaggtagacagtgaatgtattggtttctatgtttaattgtgtaagaaacttatcatttgaaatgtcattcagttgtatgctat |
498 |
Q |
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| T |
38136160 |
tatatttttacgagcttgaggtagacagtgaatgtattggtttctatgtttaattgtgtaagaaacttatcatttgaaatgtcattcagttgtatgctat |
38136061 |
T |
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| Q |
499 |
ataatttactgtatctttcttatccaatat |
528 |
Q |
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| T |
38136060 |
gtaatttattgtatctttcttatccaatat |
38136031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 138 - 320
Target Start/End: Complemental strand, 38123200 - 38123027
Alignment:
| Q |
138 |
agataagaaggttctcccctttattagaaagttcattgctttctggtaatgatggtgtcgtctcggatgagtggaaaacagttcctgatatttggagaac |
237 |
Q |
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| T |
38123200 |
agataagaaggttttcccctttattagaaagttcc---------ggtaatggtggtgtggctttagatgagtggaaagctgttcctgatatttggagaac |
38123110 |
T |
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| Q |
238 |
ttctgctgagaagtatggtgataaaattgctctcatagatccatatcatgatcctccttcaattatgacttacaaacaggttt |
320 |
Q |
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| T |
38123109 |
ttctgcagagaagtatggtgataaagtagctttggtagatcaatatcatgatcctccttcaactatgacatacaaacaggttt |
38123027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 38136533 - 38136488
Alignment:
| Q |
19 |
tttactgtacatgtataactacatcactgtacactcatctatgtgt |
64 |
Q |
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| T |
38136533 |
tttactgtacatgtataaatacatcactgtacactcatctatgtgt |
38136488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 35105339 - 35105434
Alignment:
| Q |
204 |
atgagtggaaaacagttcctgatatttggagaacttctgctgagaagtatggtgataaaattgctctcatagatccatatcatgatcctccttcaa |
299 |
Q |
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||||||||||| |||||||||||||||||| |||||||||| || |||||||||||| | || | |||||| ||||||| |||||||||||| |
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| T |
35105339 |
atgagtggaaagttgttcctgatatttggagatcttctgctgaaaaatatggtgataaagtagccttagtagatcaatatcatcatcctccttcaa |
35105434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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