View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1978_high_7 (Length: 239)
Name: NF1978_high_7
Description: NF1978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1978_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 34993987 - 34993785
Alignment:
| Q |
10 |
gtgagaagaagtaaattagatgaaagtactataaaatgaattttaataagctatagctcaaaatctaatgactattgtgtctatgaaatttattcaaata |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34993987 |
gtgaaaagaagtaaattagatgaaagtactataaaatgaattttaataagctatagctcaaaatctaatgactattgtgtctatgaaatttattcaaata |
34993888 |
T |
|
| Q |
110 |
atcnnnnnnnctttcttttaatagagatgctaatgtagatgaagatgcctattggaattgagagacttctcaagttgacagatattcacattttccttct |
209 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34993887 |
atctttttttctttcttttaatagagatgctaatgtagatgaagatgcctattggaattgggagacttctcaagttgacagatattcacattttccttct |
34993788 |
T |
|
| Q |
210 |
caa |
212 |
Q |
| |
|
||| |
|
|
| T |
34993787 |
caa |
34993785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 17441317 - 17441257
Alignment:
| Q |
127 |
ttaatagagatgctaatgtagatgaagatgcctattggaattgagagacttctcaagttga |
187 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
17441317 |
ttaatagagatgttaaagtggatgaagatgcatattggaattgggagacctctcaagttga |
17441257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 17441394 - 17441326
Alignment:
| Q |
42 |
aaaatgaattttaataagctatagctcaaaatctaatgactattgtgtctatgaaatttattcaaataa |
110 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||| | |||| ||||||| |||| |||||||||| |
|
|
| T |
17441394 |
aaaaggaattttaataggctatagctcaaagtctaagggctataaagtctatggaattgattcaaataa |
17441326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 3060883 - 3060943
Alignment:
| Q |
127 |
ttaatagagatgctaatgtagatgaagatgcctattggaattgagagacttctcaagttga |
187 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
3060883 |
ttaatagagatgttaaagtggatgaagatgcatattggaattgggagacctctcaagttga |
3060943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 3060806 - 3060874
Alignment:
| Q |
42 |
aaaatgaattttaataagctatagctcaaaatctaatgactattgtgtctatgaaatttattcaaataa |
110 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||| | |||| ||||||| |||| |||||||||| |
|
|
| T |
3060806 |
aaaaggaattttaataggctatagctcaaagtctaagggctataaagtctatggaattgattcaaataa |
3060874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 4875526 - 4875586
Alignment:
| Q |
127 |
ttaatagagatgctaatgtagatgaagatgcctattggaattgagagacttctcaagttga |
187 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
4875526 |
ttaatagagatgttaaagtggatgaagatgcatattggaattgggagacctctcaagttga |
4875586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 4875449 - 4875517
Alignment:
| Q |
42 |
aaaatgaattttaataagctatagctcaaaatctaatgactattgtgtctatgaaatttattcaaataa |
110 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||| | |||| ||||||| |||| |||||||||| |
|
|
| T |
4875449 |
aaaaggaattttaataggctatagctcaaagtctaagggctataaagtctatggaattgattcaaataa |
4875517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University