View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1978_low_3 (Length: 397)
Name: NF1978_low_3
Description: NF1978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1978_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 2608305 - 2608675
Alignment:
| Q |
16 |
taattcacttggcatctcatcaaccaaacaccatttatccccttcactcatttcccaaacacaaacatttccaccacacgtgccaccaatcaatcccaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2608305 |
taattcacttggcatctcatcaaccaaacaccatttatccccttcactcatttcccaaacacaaacatttccaccacacgtgccaccaatcaatcccaac |
2608404 |
T |
|
| Q |
116 |
cctccattccatctcacaagtgttgcaaattcaagcctatccgcaagaggtacactaaattctctccaacaattattcccaacatcaaatcccatcacat |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2608405 |
cctccattccatctcacaagtgtagcaaattcaagcctatctgcaagaggcacactaaattccctccaacaattattcccaacatcaaatcccattacac |
2608504 |
T |
|
| Q |
216 |
tatatgccctagccgaggtaatccaatacaacgttgttgttcttcttccctctatacacacattctcatttggtgtccaaaccgttagcctaaccgaaaa |
315 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2608505 |
tatatgccctagctgaggttatccaatacaatgttgttgttcttgttccctctatacacacattctcatttggtgtccaaaccgttagcctaaccgaaaa |
2608604 |
T |
|
| Q |
316 |
ttcaaccggcatcgatccaacgattttccacgtgtcaatacaagattcatatatttcaacggtcggttcat |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2608605 |
ttcaaccggcatcgatccaacgattttccacgtgtcaatacaagattcatatatttcaacggtcggttcat |
2608675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University