View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1978_low_5 (Length: 394)
Name: NF1978_low_5
Description: NF1978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1978_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 30757271 - 30756934
Alignment:
| Q |
19 |
gaaccctaaatcaaacacttcttttcattttgctttgtccgatgtcacatatacaattgaggaacattggttagccataatgagcgccacacatatgttt |
118 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30757271 |
gaaccctaaatcaaacacttattttcattttgctttgtccggtgtcacatatacaattgaggaacattggttagccataatgagcgccacacatatgttt |
30757172 |
T |
|
| Q |
119 |
tagagctggtttctcattaaactgaagcagaaggtgatgaaacttcttttatttttgttgtttctaaaagtcgaaagaagaaaaataatcgcgaagcata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30757171 |
tagagctggtttctcattaaactgaagcagaaggtgatgaaacttcttttatttttgttgtttctaaaagtcgaaagaagaaaaataatcgcgaagcata |
30757072 |
T |
|
| Q |
219 |
tccaaccccgctcaaagggttcacgttcaccatcatctattcgccaatgatattacgggaatatgcaactgttacctattaggagagactttttcagggc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30757071 |
tccaaccccgctcaaagggttcacgttcaccatcatctattcgccaatgatattacgggaatatgcaactgtttcctattaggagagactttttcagggc |
30756972 |
T |
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| Q |
319 |
cgctacggtttgcctaattactgtttccttactacttc |
356 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
30756971 |
tgctacggtttgcctaattactgtttccttactacttc |
30756934 |
T |
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