View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1978_low_6 (Length: 273)
Name: NF1978_low_6
Description: NF1978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1978_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 22776756 - 22776507
Alignment:
| Q |
18 |
ttaagtatacaaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattgaaacttgggttggaggatgtgagatggttcat |
117 |
Q |
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| T |
22776756 |
ttaagtatacgaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattgaaacttgggttggaggatgtgagatggttcat |
22776657 |
T |
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| Q |
118 |
gatgggagatgatgatactgtatttatggttgataatgtggttagagttctttcaaaatatgatcatactcaattttattatgttggaagctcctctgag |
217 |
Q |
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| T |
22776656 |
gatgggagatgatgatactgtgtttatggttgataatgtggttagagttctttcaaaatatgatcatactcaattttattatgttggaagctcctctgag |
22776557 |
T |
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| Q |
218 |
agtcatgttcagaacatacatttctcttatgctatggcttatggtggtgg |
267 |
Q |
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| T |
22776556 |
agtcatgttcagaacatacatttctcgtatgctatggcttatggtggtgg |
22776507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 22 - 270
Target Start/End: Complemental strand, 40945366 - 40945118
Alignment:
| Q |
22 |
gtatacaaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattgaaacttgggttggaggatgtgagatggttcatgatg |
121 |
Q |
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| T |
40945366 |
gtatacaaatcgacagggacaaaggtcagcattgaggatatcaagggttgtgacagagacattgaagcttggattgaaagatgtaagatggtttgtgatg |
40945267 |
T |
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| Q |
122 |
ggagatgatgatactgtatttatggttgataatgtggttagagttctttcaaaatatgatcatactcaattttattatgttggaagctcctctgagagtc |
221 |
Q |
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| T |
40945266 |
ggagatgatgatactgtttttgttgttgataatgttgttagaattctttcaaagtatgaccatagacatttttattatgttggtagttcttctgagagtc |
40945167 |
T |
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| Q |
222 |
atgttcagaacatacatttctcttatgctatggcttatggtggtggtgg |
270 |
Q |
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|||| ||||| || ||||| || ||||||||||| |||||||||||||| |
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| T |
40945166 |
atgtccagaatattcatttttcatatgctatggcatatggtggtggtgg |
40945118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 5180527 - 5180614
Alignment:
| Q |
180 |
atcatactcaattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtgg |
267 |
Q |
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| T |
5180527 |
atcataatcaattttactacgtcggaaactcctctgagagtcatgttcaaaacatacatttctcctattctatgacttatggtggtgg |
5180614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 2619329 - 2619384
Alignment:
| Q |
215 |
gagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtggtgg |
270 |
Q |
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| T |
2619329 |
gagagtcatttgcagaatatatatttttcttatggtatggcttatggtggtggtgg |
2619384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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