View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1978_low_7 (Length: 269)
Name: NF1978_low_7
Description: NF1978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1978_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 10748274 - 10748035
Alignment:
| Q |
13 |
gagagggtatcatctcatctcatcagcatgnnnnnnnacaatgtttgcatatatgtagggacctgagctatacgcagaaagtggattaacaatctttcca |
112 |
Q |
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| T |
10748274 |
gagagggtatcatctcatctcatcagcatgtttttttacaatgtttgcatatatgtagggacctgagctatacgcagaaagtggattaacagtctttcca |
10748175 |
T |
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| Q |
113 |
ttgcaattagaggcaaagaataagcccatgtatggtgctggaagaagcatggaggatatgctagattctggaagaggattaccaatattgatacaagtaa |
212 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10748174 |
ttgcaattagaggtaaagaataagcccatgtatggtgctggaagaagcatggaggatatgctagattctggaagaggattaccaatattgatacaagtaa |
10748075 |
T |
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| Q |
213 |
ccttgagttcaagttttgaagttgtgccagcacttgtaaa |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
10748074 |
ccttgagttcaagttttgaagttgtgccagcacttgtaaa |
10748035 |
T |
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