View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19790_high_5 (Length: 258)
Name: NF19790_high_5
Description: NF19790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19790_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 36821319 - 36821086
Alignment:
| Q |
16 |
aatacaccgacaggtgtgattacatgcaaatgcaatcaattcattttctcatattatcactggtgtccacgtgccaaagtcatatccagtatccatgtgt |
115 |
Q |
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| T |
36821319 |
aatacactgacaggtgtgattacatgcaaatgcaatcaattcattttctcatattatcactggtgtcgacgtgccaaagtcatatccagtatccatgtgt |
36821220 |
T |
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| Q |
116 |
gtgtcggtgcttcatatatagtgaacttcaaatccactaatttcaactaactaacatttcaaaaccaaaatacaacataaatcagacctaattgaaaatc |
215 |
Q |
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| T |
36821219 |
gtgtcggtgcttcatatatagtgaacttcaaatccactaatttcaactaactaacatttcaaaaccaaaatacaacataaatcagacctaattgaaaatc |
36821120 |
T |
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| Q |
216 |
gaactccaaaaaacaatgacttaattatgatgat |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
36821119 |
gaactccaaaaaacaatgacttaattatgatgat |
36821086 |
T |
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