View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19790_low_5 (Length: 271)
Name: NF19790_low_5
Description: NF19790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19790_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 43817223 - 43817453
Alignment:
| Q |
24 |
gcgccattgcaaacacaccaccttccccatccacagaaaatttatgttccccggcacccttggtcactttcaaaatcaccgtctcaacatgtttcgcatc |
123 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43817223 |
gcgccattgcaaacgcaccaccttccccatccacagaaaatttatgttccccggcacccttggtcactttcaaaatcaccgtctcaacatgtttcgcatc |
43817322 |
T |
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| Q |
124 |
caccgtctctcccttttccgtggacccacatattttcgtatcacgcgataaatctacactctcatcaaagaaagtgtagttatcataacgaagaaaacaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43817323 |
caccgtctctcccttttccgtggacccacatattttcgtatcacgcgataaatctacactctcatcaaagaaagtgtagttatcataacgaagaaaacaa |
43817422 |
T |
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| Q |
224 |
ccgtcgaggtaaattctacctgaaacctttg |
254 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
43817423 |
ccgtcgaggtaaattctacctgaaacctttg |
43817453 |
T |
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