View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19791_high_11 (Length: 289)

Name: NF19791_high_11
Description: NF19791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19791_high_11
NF19791_high_11
[»] chr6 (35 HSPs)
chr6 (17-268)||(28795619-28795870)
chr6 (17-273)||(28789595-28789857)
chr6 (22-137)||(27657548-27657663)
chr6 (44-129)||(25077281-25077366)
chr6 (25-137)||(26659209-26659321)
chr6 (25-137)||(26765180-26765292)
chr6 (84-136)||(26626440-26626492)
chr6 (84-136)||(26732417-26732469)
chr6 (219-273)||(28782429-28782483)
chr6 (185-261)||(26638807-26638883)
chr6 (185-261)||(26744773-26744849)
chr6 (185-269)||(31287981-31288068)
chr6 (185-261)||(26626526-26626602)
chr6 (185-261)||(26732503-26732579)
chr6 (185-261)||(26805925-26806001)
chr6 (84-135)||(31287883-31287934)
chr6 (191-261)||(26876969-26877039)
chr6 (192-240)||(27589869-27589917)
chr6 (192-240)||(27674293-27674341)
chr6 (192-240)||(27695326-27695374)
chr6 (26-69)||(26626376-26626419)
chr6 (26-69)||(26732353-26732396)
chr6 (90-137)||(26805824-26805871)
chr6 (196-238)||(25514246-25514288)
chr6 (196-238)||(25583088-25583130)
chr6 (179-253)||(26659357-26659431)
chr6 (179-253)||(26765328-26765402)
chr6 (199-261)||(26888515-26888577)
chr6 (35-77)||(31287816-31287858)
chr6 (192-261)||(25077396-25077465)
chr6 (25-66)||(26638644-26638685)
chr6 (25-66)||(26744610-26744651)
chr6 (216-269)||(26888265-26888318)
chr6 (90-131)||(27589957-27589998)
chr6 (192-240)||(27682319-27682367)
[»] scaffold0277 (2 HSPs)
scaffold0277 (17-273)||(10342-10604)
scaffold0277 (25-273)||(1382-1630)
[»] scaffold0419 (1 HSPs)
scaffold0419 (17-268)||(10745-10996)
[»] chr4 (12 HSPs)
chr4 (84-137)||(18686452-18686505)
chr4 (85-137)||(18696258-18696310)
chr4 (185-266)||(18676286-18676367)
chr4 (84-137)||(18681779-18681832)
chr4 (84-137)||(18720918-18720971)
chr4 (84-137)||(18726011-18726064)
chr4 (84-132)||(18676417-18676465)
chr4 (197-258)||(18686334-18686395)
chr4 (197-266)||(18720816-18720885)
chr4 (197-266)||(18728252-18728321)
chr4 (94-132)||(18728380-18728418)
chr4 (197-266)||(18696132-18696201)
[»] chr1 (2 HSPs)
chr1 (79-137)||(26139315-26139373)
chr1 (185-261)||(265015-265094)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 28795619 - 28795870
Alignment:
Q  17 tggagtcggaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatga 116  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  28795619 tggagtcggaacattcatttttgtttgatgtgaaattggaagaacagattaaacatttgaatctcatttctgaaatggacaaagcacttttaaaaaatga 28795718  T
Q  117 gtggatccatgtggagcttaattttataaatagtttttggaataaagggatccatgtgactgaaaaactaagcagtgcacaaatgggaatccacgcgagg 216  Q
    ||||||||||||||||||||||||| |||| | | |||||||||||  ||||  ||||||||||||| |||||||||| |||||||||||||||| ||||    
T  28795719 gtggatccatgtggagcttaattttgtaaagaatgtttggaataaatcgatctgtgtgactgaaaaattaagcagtgcgcaaatgggaatccacgtgagg 28795818  T
Q  217 aaggagaaaagcaacgcggaggagaatgtgatattcaccaatcctcatagag 268  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  28795819 aaggagaaaagcaacgcagaggagaatgtgatattcaccgatcctcatagag 28795870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 28789595 - 28789857
Alignment:
Q  17 tggagtcggaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatga 116  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||||| || |||||||| |||||||||||||||||||||||||||||||| |||    
T  28789595 tggagtcagaacattcatttttgtttaatctgaaattggaagaagagattacacatttgagtcgcatgtctgaaatggacaaagcacttttaaaaactga 28789694  T
Q  117 gtggatccatgtggagcttaattttataaatagtttttggaataaagggat------ccatgtgactgaaaaactaagcagtgcacaaatgggaatccac 210  Q
     ||||||||||||||||||||||||||||| ||| |||||||||||  |||      || ||||||||||||| |||||||||| |||||||||||||||    
T  28789695 atggatccatgtggagcttaattttataaagagtgtttggaataaatcgatctgtgaccgtgtgactgaaaaattaagcagtgcgcaaatgggaatccac 28789794  T
Q  211 gcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcctcatagagaatat 273  Q
    | ||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  28789795 gtgagtaaggagaaaagcaacgcagaggagaatgtgatattcaccgatccttatagagaatat 28789857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 27657663 - 27657548
Alignment:
Q  22 tcggaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatgagtgga 121  Q
    |||| |||| |||||||||||||| |||||||| |||||||||||||| ||   | |||  |||||||||||||||||| |||||| |||||||| ||||    
T  27657663 tcggcacatgcatttttgtttgatatgaaattgaaagaacagattaaatgtgcaaatcttgtgtctgaaatggacaaagaacttttgaaaaatgaatgga 27657564  T
Q  122 tccatgtggagcttaa 137  Q
    ||||||||||||||||    
T  27657563 tccatgtggagcttaa 27657548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 25077281 - 25077366
Alignment:
Q  44 atctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtg 129  Q
    |||||||||||||||||| | ||||| | |  | ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25077281 atctgaaattggaagaacgggttaaatggtcaaatctcatgtctgaaatggacaaagcacttttaaaaaatgaatggatccatgtg 25077366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 26659209 - 26659321
Alignment:
Q  25 gaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatgagtggatcc 124  Q
    |||||| ||||||||||||||||||  |||||||||   | | ||| ||| |||| || ||||||||||||||| ||||||||||||||||| |||||||    
T  26659209 gaacatacatttttgtttgatctgactttggaagaaaccagtgaacatttcagtcccacgtctgaaatggacaatgcacttttaaaaaatgaatggatcc 26659308  T
Q  125 atgtggagcttaa 137  Q
    || | ||||||||    
T  26659309 atatcgagcttaa 26659321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 26765180 - 26765292
Alignment:
Q  25 gaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatgagtggatcc 124  Q
    |||||| ||||||||||||||||||  |||||||||   | | ||| ||| |||| || ||||||||||||||| ||||||||||||||||| |||||||    
T  26765180 gaacatacatttttgtttgatctgactttggaagaaaccagtgaacatttcagtcccacgtctgaaatggacaatgcacttttaaaaaatgaatggatcc 26765279  T
Q  125 atgtggagcttaa 137  Q
    || | ||||||||    
T  26765280 atatcgagcttaa 26765292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 26626440 - 26626492
Alignment:
Q  84 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagctta 136  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  26626440 gtctgaaatggacaaaacacttttaaaaaatgaatggatccatgtggagctta 26626492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 26732417 - 26732469
Alignment:
Q  84 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagctta 136  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  26732417 gtctgaaatggacaaaacacttttaaaaaatgaatggatccatgtggagctta 26732469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 28782429 - 28782483
Alignment:
Q  219 ggagaaaagcaacgcggaggagaatgtgatattcaccaatcctcatagagaatat 273  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||    
T  28782429 ggagaaaagcaacgcagaggagaatgtgatattcaccgatcctcatagaggatat 28782483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 26638807 - 26638883
Alignment:
Q  185 taagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcct 261  Q
    |||| ||||||| ||||||||||||||     ||||||||||||||| |||||||| ||||||||||||||||||||    
T  26638807 taaggagtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatcct 26638883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 26744773 - 26744849
Alignment:
Q  185 taagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcct 261  Q
    |||| ||||||| ||||||||||||||     ||||||||||||||| |||||||| ||||||||||||||||||||    
T  26744773 taaggagtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatcct 26744849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 31287981 - 31288068
Alignment:
Q  185 taagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgc---ggaggagaatgtgatattcaccaatcctcatagaga 269  Q
    |||| |||||||||||||||||||||| |   |||||||||| ||||||   |||||||||||||||||||||| ||||  |||||||    
T  31287981 taaggagtgcacaaatgggaatccacgtgttaaaggagaaaaacaacgcagaggaggagaatgtgatattcaccgatccatatagaga 31288068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 26626526 - 26626602
Alignment:
Q  185 taagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcct 261  Q
    |||| |||||||||||||||||||| | |  |||||||||||||||| | || ||| |||| |||||||||||||||    
T  26626526 taaggagtgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgaggatgtcatattcaccaatcct 26626602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 26732503 - 26732579
Alignment:
Q  185 taagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcct 261  Q
    |||| |||||||||||||||||||| | |  |||||||||||||||| | || ||| |||| |||||||||||||||    
T  26732503 taaggagtgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgaggatgtcatattcaccaatcct 26732579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 26805925 - 26806001
Alignment:
Q  185 taagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcct 261  Q
    |||| ||||| ||||| |||||||||| |   | ||||||||||||| |||||||||||||| ||||||||||||||    
T  26805925 taaggagtgctcaaatcggaatccacgtgttaatggagaaaagcaacacggaggagaatgtggtattcaccaatcct 26806001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 31287883 - 31287934
Alignment:
Q  84 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagctt 135  Q
    ||||||||||||||||||||||||  ||||||| ||||||| ||||||||||    
T  31287883 gtctgaaatggacaaagcacttttggaaaatgaatggatccgtgtggagctt 31287934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 26876969 - 26877039
Alignment:
Q  191 gtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcct 261  Q
    ||||||||||||||||||||| |  ||||||||||| || |   |||||| ||||||||||||||||||||    
T  26876969 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatcct 26877039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 27589917 - 27589869
Alignment:
Q  192 tgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggag 240  Q
    |||||||||||||||||||| | |||| |||||||||||| ||||||||    
T  27589917 tgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggag 27589869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 27674341 - 27674293
Alignment:
Q  192 tgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggag 240  Q
    |||||||||||||||||||| | |||| |||||||||||| ||||||||    
T  27674341 tgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggag 27674293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 27695374 - 27695326
Alignment:
Q  192 tgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggag 240  Q
    |||||||||||||||||||| | |||| |||||||||||| ||||||||    
T  27695374 tgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggag 27695326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 26626376 - 26626419
Alignment:
Q  26 aacattcatttttgtttgatctgaaattggaagaacagattaaa 69  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||    
T  26626376 aacatgcatatttgtttgatctgaaattggaagaaaagattaaa 26626419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 26732353 - 26732396
Alignment:
Q  26 aacattcatttttgtttgatctgaaattggaagaacagattaaa 69  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||    
T  26732353 aacatgcatatttgtttgatctgaaattggaagaaaagattaaa 26732396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 26805824 - 26805871
Alignment:
Q  90 aatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 137  Q
    ||||||||||| |||||  |||||||| ||||||||||||||||||||    
T  26805824 aatggacaaagtactttcgaaaaatgaatggatccatgtggagcttaa 26805871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 25514246 - 25514288
Alignment:
Q  196 caaatgggaatccacgcgaggaaggagaaaagcaacgcggagg 238  Q
    |||||||||||||||| | ||||||||||||||||| ||||||    
T  25514246 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 25514288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 25583088 - 25583130
Alignment:
Q  196 caaatgggaatccacgcgaggaaggagaaaagcaacgcggagg 238  Q
    |||||||||||||||| | ||||||||||||||||| ||||||    
T  25583088 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 25583130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 26659357 - 26659431
Alignment:
Q  179 aaaaactaagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattca 253  Q
    ||||| |||||||||| ||||| |||||||| | |  |||||||||||||||| |||| ||| || |||||||||    
T  26659357 aaaaattaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattca 26659431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 26765328 - 26765402
Alignment:
Q  179 aaaaactaagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattca 253  Q
    ||||| |||||||||| ||||| |||||||| | |  |||||||||||||||| |||| ||| || |||||||||    
T  26765328 aaaaattaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattca 26765402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 26888515 - 26888577
Alignment:
Q  199 atgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcct 261  Q
    ||||||||||| |||  |||||||||||||||| || ||||| ||| ||||||||||| ||||    
T  26888515 atgggaatccatgcgttgaaggagaaaagcaacacgaaggaggatgcgatattcaccagtcct 26888577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 31287816 - 31287858
Alignment:
Q  35 ttttgtttgatctgaaattggaagaacagattaaacgtttgag 77  Q
    |||||||||||||||||||||||||||| | |||||| |||||    
T  31287816 ttttgtttgatctgaaattggaagaacataataaacgcttgag 31287858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 25077396 - 25077465
Alignment:
Q  192 tgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcct 261  Q
    |||| ||| ||||||||| | | |||||||||||||||||  ||| ||| ||||||||||||| ||||||    
T  25077396 tgcaaaaaagggaatccatgtgcggaaggagaaaagcaacaaggatgaggatgtgatattcactaatcct 25077465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 26638644 - 26638685
Alignment:
Q  25 gaacattcatttttgtttgatctgaaattggaagaacagatt 66  Q
    |||||| |||||||||||||  ||||||||||||||||||||    
T  26638644 gaacatgcatttttgtttgacttgaaattggaagaacagatt 26638685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 26744610 - 26744651
Alignment:
Q  25 gaacattcatttttgtttgatctgaaattggaagaacagatt 66  Q
    |||||| |||||||||||||  ||||||||||||||||||||    
T  26744610 gaacatgcatttttgtttgacttgaaattggaagaacagatt 26744651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 26888265 - 26888318
Alignment:
Q  216 gaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcctcatagaga 269  Q
    |||||||||| | |||  ||||||| |||||||||||||||||||| |||||||    
T  26888265 gaaggagaaaggaaacatggaggaggatgtgatattcaccaatccttatagaga 26888318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 27589998 - 27589957
Alignment:
Q  90 aatggacaaagcacttttaaaaaatgagtggatccatgtgga 131  Q
    ||||||||||| |||||| |||||||| ||||||||||||||    
T  27589998 aatggacaaaggacttttgaaaaatgaatggatccatgtgga 27589957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 27682319 - 27682367
Alignment:
Q  192 tgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggag 240  Q
    |||||||| ||||||||||| | |||| |||||||||||| ||||||||    
T  27682319 tgcacaaaggggaatccacgtgtggaatgagaaaagcaacacggaggag 27682367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 10604 - 10342
Alignment:
Q  17 tggagtcggaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatga 116  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||||| || |||||||| |||||||||||||||||||||||||||||||| |||    
T  10604 tggagtcagaacattcatttttgtttaatctgaaattggaagaagagattacacatttgagtcgcatgtctgaaatggacaaagcacttttaaaaactga 10505  T
Q  117 gtggatccatgtggagcttaattttataaatagtttttggaataaagggat------ccatgtgactgaaaaactaagcagtgcacaaatgggaatccac 210  Q
     ||||||||||||||||||||||||||||| ||| |||||||||||  |||      || ||||||||||||| |||||||||| |||||||||||||||    
T  10504 atggatccatgtggagcttaattttataaagagtgtttggaataaatcgatctgtgaccgtgtgactgaaaaattaagcagtgcgcaaatgggaatccac 10405  T
Q  211 gcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcctcatagagaatat 273  Q
    | ||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  10404 gtgagtaaggagaaaagcaacgcagaggagaatgtgatattcaccgatccttatagagaatat 10342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 25 - 273
Target Start/End: Complemental strand, 1630 - 1382
Alignment:
Q  25 gaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatgagtggatcc 124  Q
    |||||||||||||||||  ||||||||||| || ||||||||  || |||| ||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  1630 gaacattcatttttgttgaatctgaaattgaaacaacagatttcacttttgggtcgcatgtctgaaatggaaaaagcacttttaaaaaatgaatggatcc 1531  T
Q  125 atgtggagcttaattttataaatagtttttggaataaagggatccatgtgactgaaaaactaagcagtgcacaaatgggaatccacgcgaggaaggagaa 224  Q
    ||||||| ||||||||| |||| | | ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  1530 atgtggaacttaattttgtaaagaatgtttggaataaagggatccaagtgattgaaaaactaagcagtgcacaaatgggaatccacgtgaggatggagaa 1431  T
Q  225 aagcaacgcggaggagaatgtgatattcaccaatcctcatagagaatat 273  Q
    ||||||||| |||||||| |||||||||||| |||||||||||||||||    
T  1430 aagcaacgcagaggagaacgtgatattcaccgatcctcatagagaatat 1382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 10745 - 10996
Alignment:
Q  17 tggagtcggaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatga 116  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||||| || |||| ||| | |||||||||||||| ||||| |||||| ||||||    
T  10745 tggagtcagaacattcatttttgtttaatctgaaattggaagaagagattacacatttgtgtcgcctgtctgaaatggacgaagcaattttaagaaatga 10844  T
Q  117 gtggatccatgtggagcttaattttataaatagtttttggaataaagggatccatgtgactgaaaaactaagcagtgcacaaatgggaatccacgcgagg 216  Q
     |||||||||||||||||||||||| |||| | | |||||||||||  ||||||||||||||||||| |||||||||| ||||| |||||||||| ||||    
T  10845 atggatccatgtggagcttaattttgtaaagaatgtttggaataaatcgatccatgtgactgaaaaattaagcagtgcgcaaataggaatccacgtgagg 10944  T
Q  217 aaggagaaaagcaacgcggaggagaatgtgatattcaccaatcctcatagag 268  Q
    | ||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  10945 atggagaaaagcaacgcagaggagaatgtgatattcaccgatcctcatagag 10996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 18686505 - 18686452
Alignment:
Q  84 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 137  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||| ||||    
T  18686505 gtctgaaatggacaaagcacttttaaaaaatgaatggatctatgtggagtttaa 18686452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 18696310 - 18696258
Alignment:
Q  85 tctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 137  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||| ||||    
T  18696310 tctgaaatggacaaagcacttttaaaaaatgaatggatcaatgtggagtttaa 18696258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 266
Target Start/End: Complemental strand, 18676367 - 18676286
Alignment:
Q  185 taagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcctcatag 266  Q
    |||| |||||| ||||||||||||||| | | |||||||||| |||| || | ||| |||||||||||||||||||| ||||    
T  18676367 taagaagtgcaaaaatgggaatccacgtgtgcaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatag 18676286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 18681832 - 18681779
Alignment:
Q  84 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 137  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||||| ||||    
T  18681832 gtctgaaatggacaaagcacttttaaaaaatgaacggatctatgtggagtttaa 18681779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 18720971 - 18720918
Alignment:
Q  84 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 137  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||||| ||||    
T  18720971 gtctgaaatggacaaagcacatttaaaaaatgaatggatctatgtggagtttaa 18720918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 18726064 - 18726011
Alignment:
Q  84 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 137  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||||| ||||    
T  18726064 gtctgaaatggacaaagcacttttaaaaaatgaacggatctatgtggagtttaa 18726011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 18676465 - 18676417
Alignment:
Q  84 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggag 132  Q
    ||||| ||||||||||||||||||||||||||| |||||| ||||||||    
T  18676465 gtctgcaatggacaaagcacttttaaaaaatgaatggatctatgtggag 18676417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 18686395 - 18686334
Alignment:
Q  197 aaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaat 258  Q
    ||||||||||||||| | |||||||||||| |||| || | ||| |||||||||||||||||    
T  18686395 aaatgggaatccacgtgtggaaggagaaaaacaacacgaatgaggatgtgatattcaccaat 18686334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 18720885 - 18720816
Alignment:
Q  197 aaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcctcatag 266  Q
    ||||||||||||||| |  ||||||||||| |||| || | ||| |||||||||||||||||||| ||||    
T  18720885 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatag 18720816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 18728321 - 18728252
Alignment:
Q  197 aaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcctcatag 266  Q
    ||||||||||||||| | | |||||||||| |||| || | ||| |||||||||||||||||||| ||||    
T  18728321 aaatgggaatccacgtgcgcaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatag 18728252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 18728418 - 18728380
Alignment:
Q  94 gacaaagcacttttaaaaaatgagtggatccatgtggag 132  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  18728418 gacaaagcacttttaaaaaatgaatggatctatgtggag 18728380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 18696201 - 18696132
Alignment:
Q  197 aaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatattcaccaatcctcatag 266  Q
    ||||||||||||||| | ||||||||||||| |||    | ||| |||||||||||||||||||| ||||    
T  18696201 aaatgggaatccacgtgtggaaggagaaaagtaacataaatgaggatgtgatattcaccaatccttatag 18696132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 26139315 - 26139373
Alignment:
Q  79 ctcatgtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 137  Q
    ||||||||| || ||||  ||||||||||||||||||| ||||||||||| ||||||||    
T  26139315 ctcatgtctaaactggaggaagcacttttaaaaaatgaatggatccatgtagagcttaa 26139373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 265094 - 265015
Alignment:
Q  185 taagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaac---gcggaggagaatgtgatattcaccaatcct 261  Q
    |||| |||||||||||||||||||||| |   | |||||||||||||   | |||||| ||||| |||||||||||||||    
T  265094 taagaagtgcacaaatgggaatccacgagttaatggagaaaagcaacagggaggaggataatgttatattcaccaatcct 265015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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