View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19791_high_14 (Length: 247)
Name: NF19791_high_14
Description: NF19791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19791_high_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 28684983 - 28685212
Alignment:
| Q |
18 |
aatatagcattaccatcataatttttatgattatgtgttctatggttgaaggtcactaagttttgaactgataataatataacttgattttgtgannnnn |
117 |
Q |
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| T |
28684983 |
aatatagcattaccatcataatttttatgattatgtgttctatggttgaaggtcactaagttttgaactgataataatataacttgattttgtgattttt |
28685082 |
T |
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| Q |
118 |
nnaactattaaaaattataaactgagatgtggatgttttgtcaatttgtttgcttttctattcagataaattggttatttttatctggatattgttcagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28685083 |
ttaactattaaaaattataaactgagatgtggatgttttgtcaatttgtttgcttttctattcagataaattggttatttttatctggatattgttcagt |
28685182 |
T |
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| Q |
218 |
attcattttctcgttatttgtttgaacacg |
247 |
Q |
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||| |||||||||||||||||||||||||| |
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| T |
28685183 |
attgattttctcgttatttgtttgaacacg |
28685212 |
T |
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