View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19791_high_6 (Length: 363)

Name: NF19791_high_6
Description: NF19791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19791_high_6
NF19791_high_6
[»] chr8 (1 HSPs)
chr8 (18-306)||(21120622-21120910)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 21120910 - 21120622
Alignment:
Q  18 cttagtacgggttctaatctcggatttacgagctttgttgtaaacgcgacgcctctcagcctgaagagctttcttaatggcggaatcaaccttctttgga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21120910 cttagtacgggttctaatctcggatttacgagctttgttgtaaacgcgacgcctctcagcctgaagagctttcttaatggcggaatcaaccttctttgga 21120811  T
Q  118 gcagcctcgcaaacaacaacaacaccacgcctctggaccgtattcaaagagaacgtaccttgtgaaaggactctagattgggaaatgtttcgggagaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21120810 gcagcctcgcaaacaacaacaacaccacgcctctggaccgtattcaaagagaacgtaccttgtgaaaggactctagattgggaaatgtttcgggagaaac 21120711  T
Q  218 ttagtgaaccggaatttgatgatgaagttagggtaaggttcttcattttcgaaggaaggttcaacaatgaacatgaaactgaagccata 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21120710 ttagtgaaccggaatttgatgatgaagttagggtaaggttcttcattttcgaaggaaggttcaacaatgaacatgaaactgaagccata 21120622  T

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