View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19791_low_17 (Length: 288)
Name: NF19791_low_17
Description: NF19791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19791_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 55705559 - 55705810
Alignment:
| Q |
14 |
aatatgggaagaaatcaggtctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagct |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
55705559 |
aatatgggaagaaatcaggtctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagccagtgcaggatagtacatggcaatgggagct |
55705658 |
T |
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| Q |
114 |
ggaataatagtagcagaaaatcttacattaactggttcaattgaaggagcagtcactcaaaacgtaaatcttgagaatctttatgaaactattcctctga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
55705659 |
ggaataatagtagcagaaaatcttacattaactggttcaattgaaggagcagtcactcaaaacgtaaatcttgagaatctttttgaaactattcctctga |
55705758 |
T |
|
| Q |
214 |
aagaaattgtacggaggggtaaactctctactgatacgttggttgatgagct |
265 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
55705759 |
aagaaattgtacggagcggtaaactctctactgatacgttggttgatgagct |
55705810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 45878802 - 45878669
Alignment:
| Q |
23 |
agaaatcaggtctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagctggaataata |
122 |
Q |
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| T |
45878802 |
agaaatcaggcttctggctgccaaaaaaccagtcattgcttcaatgtctgatgtggcagcaagtggaggatactacatggcaatgggagcaggagctatt |
45878703 |
T |
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| Q |
123 |
gtagcagaaaatcttacattaactggttcaattg |
156 |
Q |
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| T |
45878702 |
gttgcagaaagtctaaccttaactggttcaattg |
45878669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 45860286 - 45860198
Alignment:
| Q |
23 |
agaaatcaggtctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggag |
111 |
Q |
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| T |
45860286 |
agaaatcaggcttcttgcagccaaaaaaccaatcattgcttcaatgtctgatgtggcagctagtggaggatactatatggcgatgggag |
45860198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 47293222 - 47293290
Alignment:
| Q |
88 |
caggatagtacatggcaatgggagctggaataatagtagcagaaaatcttacattaactggttcaattg |
156 |
Q |
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| T |
47293222 |
caggatactacgtggcaatgggcgcaggagttattgttgcagaaaatcttaccttaactggttcaattg |
47293290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 56208972 - 56208877
Alignment:
| Q |
54 |
gtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagctggaataatagtagcagaaaatcttacattaactggt |
149 |
Q |
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||||||||||| |||| | | || |||||||| |||||| |||||||||||||||| ||| | || || |||||||||||||| ||||||||| |
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| T |
56208972 |
gtcattgcttcgatgtctcatatgacagcaagtggaggataccacatggcaatgggagcaggagttattgttgcagaaaatcttaccttaactggt |
56208877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 35802828 - 35802699
Alignment:
| Q |
26 |
aatcaggtctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagctggaataatagta |
125 |
Q |
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|||||| ||||||||| | ||||||| |||||||||||||||| ||| | |||| ||||| ||||||| ||||||||||||||||| ||| || ||| |
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| T |
35802828 |
aatcagatctcttgcttcaaaaaaacccgtcattgcttcaatgtctgatgcggcaacaagtgcaggatactacatggcaatgggagcaggagctatcgta |
35802729 |
T |
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| Q |
126 |
gcagaaaatcttacattaactggttcaatt |
155 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
35802728 |
gcagaaaatcttactttaactggttcaatt |
35802699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 10521033 - 10521109
Alignment:
| Q |
62 |
ttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagctggaataatagtagcagaaaatctta |
138 |
Q |
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|||||||| ||| || ||||||||| ||||||| |||||||||| |||||| ||| || |||||||||||||||| |
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| T |
10521033 |
ttcaatgtctgatgtagcagcaagtgcaggatactacatggcaacgggagcaggagatatcgtagcagaaaatctta |
10521109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 7972545 - 7972414
Alignment:
| Q |
25 |
aaatcaggtctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagctggaataatagt |
124 |
Q |
| |
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||||||||||||||||| || ||||||| || ||||||| |||| ||| ||||| || ||||||| |||||||||||||| || ||| | || || |
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| T |
7972545 |
aaatcaggtctcttgcttccaaaaaaccagttattgctttgatgtctgatctggcaatgagcgcaggatactacatggcaatgggcgcaggagttattgt |
7972446 |
T |
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| Q |
125 |
agcagaaaatcttacattaactggttcaattg |
156 |
Q |
| |
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|||||||| ||||| |||||||||||||||| |
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| T |
7972445 |
tgcagaaaaccttaccttaactggttcaattg |
7972414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 7962165 - 7962124
Alignment:
| Q |
23 |
agaaatcaggtctcttgctgcccaaaaacctgtcattgcttc |
64 |
Q |
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|||||||||||||||||||||| ||||||| || |||||||| |
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|
| T |
7962165 |
agaaatcaggtctcttgctgccaaaaaaccagttattgcttc |
7962124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 24354011 - 24354113
Alignment:
| Q |
54 |
gtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagctggaataatagtagcagaaaatcttacattaactggttcaa |
153 |
Q |
| |
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||||||||||| ||| ||| |||||||||||| |||||| ||||||||||||||| ||| || || ||||||| |||||| ||||||||||||| |
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| T |
24354011 |
gtcattgcttcgatggctgatgtggcagcaagtggaggatactacatggcaatgggaactgatgctattgttgcagaaagtcttaccttaactggttcaa |
24354110 |
T |
|
| Q |
154 |
ttg |
156 |
Q |
| |
|
||| |
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|
| T |
24354111 |
ttg |
24354113 |
T |
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