View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19791_low_2 (Length: 691)
Name: NF19791_low_2
Description: NF19791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19791_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 120 - 433
Target Start/End: Complemental strand, 29603879 - 29603556
Alignment:
| Q |
120 |
actaagttgtaaatcaaattcatgttgcgatcttttatattg----------agctcaagtgccgctgatatgatctcaattgtggtcatgttgcagtct |
209 |
Q |
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| T |
29603879 |
actaagttgtaaatcaaattcatgttgcgatcttttatattgtgtacaattgagctcaagtgccgctgatataatctcaattgtggtcatgttgcagtct |
29603780 |
T |
|
| Q |
210 |
cagacacgaaattccttcattttgcaacctaaactgtggttgtgtatcccttttttgaaaaccttgcatgggagattcatctaagctttttccttcatta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29603779 |
cagacacgaaattccttcattttgcaacctaaactgtggttgtgtatcccttttttgaaaaccttgcatgcgagattcatctaagctttttccttcatta |
29603680 |
T |
|
| Q |
310 |
tatatggaactatctctgaaatagtagcgatgtatttaattatttaaggacacaatggtatagtggtaagaaaagcatatcaaataggttttttggagag |
409 |
Q |
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| T |
29603679 |
tatatggaactatctctgaaatattagcgatgtatttaattatttaaagacacaatggaatagtggtaagaaaagcatatcaaataggttttttggagag |
29603580 |
T |
|
| Q |
410 |
tggcgcagtgctgagtttttcatt |
433 |
Q |
| |
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|||| ||||||||||||||||||| |
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| T |
29603579 |
tggcacagtgctgagtttttcatt |
29603556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 456 - 681
Target Start/End: Complemental strand, 29603569 - 29603344
Alignment:
| Q |
456 |
ctgagtttttcatttcatactttatgatttctcttttattgtgtttgaagttaatggtttcatttattttctataaaactcttcccatccttacaatagt |
555 |
Q |
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| T |
29603569 |
ctgagtttttcatttcatactttatgatttctcttttattgtgtttgaagttaatggtttcatttattttctataaaactcttcccatccttacaatagt |
29603470 |
T |
|
| Q |
556 |
tgatttgcaattagagttgtcagaaagcaaaaatctgcctgcctcatatgttccttagttttttcccgttagtgttgtgttcgatgttcgtgtctatgtc |
655 |
Q |
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| T |
29603469 |
tgatttgcaattagagttgtcagaaagcaaaaatctgcctgcctcatatgttccttagttttttcccgttagtgttgtgttcgatgttcgtgtctatgtc |
29603370 |
T |
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| Q |
656 |
attgcttcatagttcactagtctctg |
681 |
Q |
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| T |
29603369 |
attgcttcatagttcactagtctctg |
29603344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 29605291 - 29605217
Alignment:
| Q |
48 |
ttcagtgtatgcttgtttgaattgaaaatttgcttcacaagtaactctaactgtaaccgattactaactcacact |
122 |
Q |
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| T |
29605291 |
ttcagtgtatgcttgtttgaattggaaacttgcttcacaagtaactctaaccgtaaccgattactaactcacact |
29605217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 32833691 - 32833635
Alignment:
| Q |
48 |
ttcagtgtatgcttgtttgaattgaaaatttgcttcacaagtaactctaactgtaac |
104 |
Q |
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| T |
32833691 |
ttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaac |
32833635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 32840105 - 32840049
Alignment:
| Q |
48 |
ttcagtgtatgcttgtttgaattgaaaatttgcttcacaagtaactctaactgtaac |
104 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
32840105 |
ttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaac |
32840049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 29602539 - 29602626
Alignment:
| Q |
165 |
tcaagtgccgctgatatgatctcaattgtggtcatgttgcagtctca--gacacgaaattccttcattttgcaacctaaactgtggtt |
250 |
Q |
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|||| ||||||| ||||||||||| ||||||||||||||||||| || |||| |||||||||| |||||| ||||||| ||||||| |
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| T |
29602539 |
tcaaatgccgctcatatgatctcacttgtggtcatgttgcagtcgcagcgacatgaaattccttgattttggaacctaagttgtggtt |
29602626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 19946930 - 19947009
Alignment:
| Q |
18 |
gtgatacccatcgttattatatagtggcgcttcagtgtatgcttgtttgaattgaaaatttgcttcacaagtaactctaa |
97 |
Q |
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| T |
19946930 |
gtgatacacattgttattatatactagtgctttagtgtatgcttgttggaactagaagcttgcttcacaagtaactctaa |
19947009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 19947230 - 19947288
Alignment:
| Q |
46 |
gcttcagtgtatgcttgtttgaattgaaaatttgcttcacaagtaactctaactgtaac |
104 |
Q |
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|||| ||||||||||| || ||| | ||| |||||||||||||||||||||||||||| |
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| T |
19947230 |
gctttagtgtatgctttttggaactagaaacttgcttcacaagtaactctaactgtaac |
19947288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 626 - 667
Target Start/End: Complemental strand, 8921118 - 8921077
Alignment:
| Q |
626 |
agtgttgtgttcgatgttcgtgtctatgtcattgcttcatag |
667 |
Q |
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| T |
8921118 |
agtgttgtgtttaatgttcgtgtctatgtcattgtttcatag |
8921077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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