View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19791_low_22 (Length: 237)
Name: NF19791_low_22
Description: NF19791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19791_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41701487 - 41701706
Alignment:
| Q |
1 |
agaacttgttattatcactgaacaccaaacttcaaatttagtttctttgttgtttaatttaaacacccnnnnnnnnnnnnnnnnatgtagatgaaagtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41701487 |
agaacttgttattatcactgaacaccaaacttcaaatttagtttctttgttgtttaatttaaacacccttttttggttttttt-atgtagatgaaagtta |
41701585 |
T |
|
| Q |
101 |
agaaacaaaagagacacaggaagagtttgactttttacactgcatgttttggttttcggaaaccttacaaagttctatgtgatggaacatttgttcatca |
200 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41701586 |
agaaacaaaagagacataggaagagtttgacgttttacactgcatgttttggttttcggaaaccttacaaagttctatgtgatggaacatttgttcatca |
41701685 |
T |
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| Q |
201 |
ccttgttgtcaatcgtataac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
41701686 |
ccttgttgtcaatcgtataac |
41701706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30291809 - 30291590
Alignment:
| Q |
1 |
agaacttgttattatcactgaacaccaaacttcaaatttagtttctttgttgtttaatttaaacacccnnnnnnnnnnnnnnnnatgtagatgaaagtta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| |||| |
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| T |
30291809 |
agaacttgttattatcactgaacaccaaacttcaaatttagtttctttgttgtttaatttgaatacccttttttgattttttt-atgtagatgaaggtta |
30291711 |
T |
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| Q |
101 |
agaaacaaaagagacacaggaagagtttgactttttacactgcatgttttggttttcggaaaccttacaaagttctatgtgatggaacatttgttcatca |
200 |
Q |
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|||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
30291710 |
agaaacaaaagagacataggaagagtttaacgttttacactgcatgttttggttttcgaaaaccttacaaagttctatgtgatggaacatttgttaatca |
30291611 |
T |
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| Q |
201 |
ccttgttgtcaatcgtataac |
221 |
Q |
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|||| |||||||||||||||| |
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| T |
30291610 |
ccttattgtcaatcgtataac |
30291590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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