View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19791_low_3 (Length: 582)
Name: NF19791_low_3
Description: NF19791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19791_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 12 - 569
Target Start/End: Original strand, 51551719 - 51552276
Alignment:
| Q |
12 |
gagcacagatgaggaaaaggatcatcattggagttatttcttccgttgtcttcgtcggtctcataggttgtgcattctttgttgctaccacaaaatacaa |
111 |
Q |
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| T |
51551719 |
gagcacaaatgaggaaaaggatcatcattggagttatttcttccgttgtcttcgtcggtctcataggttgtgcattctttgttgctaccacaaaatacaa |
51551818 |
T |
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| Q |
112 |
tcctttnnnnnnnnnnnnnnnnnnnaatcatccagaagacacttcaaccgctaatggtagcaaacatgttgcacattcagaaaaggtagtgaaattggta |
211 |
Q |
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|||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51551819 |
tccttttggtggtggtggtggtggtagtcatccagaagacagttcaaccgctaatggtagcaaacatgttgcacattcagaaaaggtagtgaaattggta |
51551918 |
T |
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| Q |
212 |
tgcagttctgcagattacaaagaaaaatgtgaaggacctcttaacaaagcagtggaaaaggatcctaaacttcaacaccctaaagaccttctcaaagttt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51551919 |
tgcagttctgcagattacaaagaaaaatgtgaaggacctcttaacaaagcagtggaaaaggatcctaaacttcaacaccctaaagaccttctcaaagttt |
51552018 |
T |
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| Q |
312 |
atcttaaaactgtagaggatgaggttaacaaagccttcaacaaaacaaattcattcaaatttaacactaaagaagagaaagctgcatttgaggattgtaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51552019 |
atcttaaaactgtagaggatgaggttaacaaagccttcaacaaaacaaattcattcaaatttaacactaaagaagagaaagctgcatttgaggattgtaa |
51552118 |
T |
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| Q |
412 |
agagatgattcaatacgctaaggatgatttagctacctctattgatcaacttagtgaagctgacatgaaaaaactttcttcaaaaacacctgacttgaac |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51552119 |
agagatgattcaatacgctaaggatgatttagctacctctattgatcaacttagtgaagctgacatgaaaaaacttgcttcaaaaacacctgacttgaac |
51552218 |
T |
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| Q |
512 |
agttggttaagtgctgttatcactttccaagaaacttgcgttgatggttttcctgatg |
569 |
Q |
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| T |
51552219 |
agttggttaagtgctgttatcactttccaagaaacttgcgttgatggttttcctgatg |
51552276 |
T |
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