View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19791_low_8 (Length: 340)
Name: NF19791_low_8
Description: NF19791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19791_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 1393713 - 1393401
Alignment:
| Q |
18 |
aagccagccatggacttgagtccgacgaatggagccaccgcaccggattgtaccggagaggcacggttaactgtagtgatagctgaagaggagatcatag |
117 |
Q |
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| T |
1393713 |
aagccagccatggacttgagtccgacgaatggagccaccgcaccggattgtaccggagaggcacggttaactgtagtgatagctgaagaggagatcatag |
1393614 |
T |
|
| Q |
118 |
aggaagccattgttctataattgagttgcacagctagtactgaaactagctatttatataatgttttgaaattggtttctgattaattataccaatggtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1393613 |
aggaagccattgttctataattgagttgcacagctagtactgaaactagctatttatataatgttttgaaattggtttctgattaattataccaatggtt |
1393514 |
T |
|
| Q |
218 |
ttggattgtgaaaatgataaacattccatattaaccacatgagattggnnnnnnnnttgtatactggccttatcataatgcaccactatgtgaatgccac |
317 |
Q |
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| T |
1393513 |
ttggattgtgaaaatgataaacattccatattaaccacatgagattggaaaaaaaattgtatactggccttatcataatgcaccactatgtgaatgccac |
1393414 |
T |
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| Q |
318 |
gaggatgatgtcc |
330 |
Q |
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||||||||||| |
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| T |
1393413 |
atggatgatgtcc |
1393401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 1373400 - 1373291
Alignment:
| Q |
18 |
aagccagccatggacttgagtccgacgaatggagccaccgcaccggattgtaccggagaggcacggttaactgtagtgatagctgaagaggagatcatag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||| |
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| T |
1373400 |
aagccagccatggacttgagtccgacgaatggagccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagaggacatcatag |
1373301 |
T |
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| Q |
118 |
aggaagccat |
127 |
Q |
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|||||||||| |
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| T |
1373300 |
aggaagccat |
1373291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 1383676 - 1383567
Alignment:
| Q |
18 |
aagccagccatggacttgagtccgacgaatggagccaccgcaccggattgtaccggagaggcacggttaactgtagtgatagctgaagaggagatcatag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||| |
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| T |
1383676 |
aagccagccatggacttgagtccgacgaatggagccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagaggacatcatag |
1383577 |
T |
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| Q |
118 |
aggaagccat |
127 |
Q |
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|||||||||| |
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| T |
1383576 |
aggaagccat |
1383567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 1389781 - 1389672
Alignment:
| Q |
18 |
aagccagccatggacttgagtccgacgaatggagccaccgcaccggattgtaccggagaggcacggttaactgtagtgatagctgaagaggagatcatag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||| |
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| T |
1389781 |
aagccagccatggacttgagtccgacgaatggagccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagaggacatcatag |
1389682 |
T |
|
| Q |
118 |
aggaagccat |
127 |
Q |
| |
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|||||||||| |
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| T |
1389681 |
aggaagccat |
1389672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 1358057 - 1357947
Alignment:
| Q |
18 |
aagccagccatggacttgagtccgacgaatggagccaccgcaccggattgtaccggagaggcacggttaactgtagtgatagctgaagaggagatcatag |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||||||| ||||||| |
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| T |
1358057 |
aagccagccatggacttgagtccaacgaatggagccaccgcgccggattgtaccgaagaggcgcggttaactgtagtcatagctgaagaggaaatcatag |
1357958 |
T |
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| Q |
118 |
aggaagccatt |
128 |
Q |
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||||||||||| |
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| T |
1357957 |
aggaagccatt |
1357947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 1350102 - 1349992
Alignment:
| Q |
18 |
aagccagccatggacttgagtccgacgaatggagccaccgcaccggattgtaccggagaggcacggttaactgtagtgatagctgaagaggagatcatag |
117 |
Q |
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||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||| |||| | |||||||||||||| | |||||||||||| ||||||| |
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| T |
1350102 |
aagccagccatggacttaagtccaacgaatggagctaccgcgccggattgtaccgaagagacgcggttaactgtagtcacagctgaagaggacatcatag |
1350003 |
T |
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| Q |
118 |
aggaagccatt |
128 |
Q |
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||||||||||| |
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| T |
1350002 |
aggaagccatt |
1349992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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