View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19792_low_1 (Length: 525)
Name: NF19792_low_1
Description: NF19792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19792_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 14 - 507
Target Start/End: Original strand, 44020253 - 44020746
Alignment:
| Q |
14 |
aatatgaaaacaagaacaacatttatcatcatatgaagcctattactcaatgtccttccatccctactagtccaccaccagcaacaagcttacaaaattt |
113 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44020253 |
aatatgaaaacaagaacaacattcatcatcatatgaaacctgttactcaatgtccttccatccctactagtccaccaccagcaacaagcttacaaaattt |
44020352 |
T |
|
| Q |
114 |
ccttaaactaaaaaacgtggctcacccaccaccaccatcaccatcaattcttaatcttcaatcatcttggaacatatgagatattttgtagtcatgggtt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44020353 |
ccttaaactaaaaaacgtggctcacccaccaccaccatcaccatcaattcttaatcttcaatcatcttggaacatatgagatattttgtagtcatgggtt |
44020452 |
T |
|
| Q |
214 |
tgaaaggatttttaagaaaattctttatgtgatgatgaatgttgttgtttcccacaataggcaatgagaaaggctttggttaccctgaatttgttgccaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44020453 |
tgaaaggatttttaagaaaattctttatgtgatgatgaatgttgttgtttcccacaataggcaatgagaaaggctttggttaccctgaatttgttgccaa |
44020552 |
T |
|
| Q |
314 |
ttccatctgggcactgccctcccattgccgtacataaatatagaaaaatccacaaccttcaagatctgattttgtttatttgagttgtttgattttaatt |
413 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44020553 |
ttccatctgggcaatgccctcccattgccgtacataaatatagaaaaatccacaaccttcaagatttgattttgtttatttgagttgtttgattttaatt |
44020652 |
T |
|
| Q |
414 |
tgatttatgggttataggtgatgaagattttgaagagtttttaatttcagtaattgaattgttgagttttaattctgagttaaaggttgaatgt |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44020653 |
tgatttatgggttataggtgatgaagattttgaagagtttttaatttctgtaattgaattgttgagttttaattctgagttaaaggttgaatgt |
44020746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 371 - 444
Target Start/End: Complemental strand, 38543678 - 38543605
Alignment:
| Q |
371 |
ttcaagatctgattttgtttatttgagttgtttgattttaatttgatttatgggttataggtgatgaagatttt |
444 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| |||| |
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|
| T |
38543678 |
ttcaagatttgattttgtttatttgagttgtttgattttaatttggtttctgaattataggtgatgaagttttt |
38543605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 38543829 - 38543774
Alignment:
| Q |
190 |
tgagatattttgtagtcatgggtttgaaaggatttttaagaaaattctttatgtga |
245 |
Q |
| |
|
||||| |||||||||| || |||||||||||||||| ||||| || |||||||||| |
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|
| T |
38543829 |
tgagaaattttgtagtgattggtttgaaaggattttcaagaatatgctttatgtga |
38543774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 14 - 507
Target Start/End: Original strand, 26711782 - 26712280
Alignment:
| Q |
14 |
aatatgaaaacaagaacaacatttatcatcatatgaagcctattactcaatgtccttccatccctactagtccaccaccagcaacaagcttacaaaattt |
113 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26711782 |
aatataaaaacaagaacaacattcatcatcatatgaagcctattactcaatgtccttccatccctactagcccaccaccagcaacaagcttacaaaattt |
26711881 |
T |
|
| Q |
114 |
ccttaaactaaaaaacgtggctcacccaccaccaccatcaccatcaattcttaatcttcaatcatcttggaacatatgagatattttgtagtcatgggtt |
213 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26711882 |
ccttaaactaaaaaacgtgactcacccaccaccaccatcactatcaattcttaatcttcaatcatcttggaacatatgagatattttgtagtcatgggtt |
26711981 |
T |
|
| Q |
214 |
tgaaaggatttttaagaaaattctttatgtgatgatgaatgttgttgtttcccacaataggcaatgagaaaggctttggttacc----ctgaatttgttg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
26711982 |
tgaaaggatttttaagaaaattctttatgtgatgatgaatgttgttgtttcccacaataggcaatgagaaaggctttggttacctaaactgaatctgttg |
26712081 |
T |
|
| Q |
310 |
ccaattccatctgggcactg-ccctcccattgccgtacataaatatagaaaaatccacaaccttcaagatctgattttgtttatttgagttgtttgattt |
408 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26712082 |
ccaattccatctgggcactgcccctcccattgccgtacataaatatagaaaaatccacaaccttcaagatctgattttgtttatttgagttgtttgattt |
26712181 |
T |
|
| Q |
409 |
taatttgatttatgggttataggtgatgaagattttgaagagtttttaatttcagtaattgaattgttgagttttaattctgagttaaaggttgaatgt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
26712182 |
taatttgatttatgggttataggtgatgaagattttgaagagtttttaatttctgtaattgaattgttgagttttaattctgagttgaagattgaatgt |
26712280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 14 - 507
Target Start/End: Original strand, 26981520 - 26982018
Alignment:
| Q |
14 |
aatatgaaaacaagaacaacatttatcatcatatgaagcctattactcaatgtccttccatccctactagtccaccaccagcaacaagcttacaaaattt |
113 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26981520 |
aatataaaaacaagaacaacattcatcatcatatgaagcctattactcaatgtccttccatccctactagcccaccaccagcaacaagcttacaaaattt |
26981619 |
T |
|
| Q |
114 |
ccttaaactaaaaaacgtggctcacccaccaccaccatcaccatcaattcttaatcttcaatcatcttggaacatatgagatattttgtagtcatgggtt |
213 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26981620 |
ccttaaactaaaaaacgtgactcacccaccaccaccatcactatcaattcttaatcttcaatcatcttggaacatatgagatattttgtagtcatgggtt |
26981719 |
T |
|
| Q |
214 |
tgaaaggatttttaagaaaattctttatgtgatgatgaatgttgttgtttcccacaataggcaatgagaaaggctttggttacc----ctgaatttgttg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
26981720 |
tgaaaggatttttaagaaaattctttatgtgatgatgaatgttgttgtttcccacaataggcaatgagaaaggctttggttacctaaactgaatctgttg |
26981819 |
T |
|
| Q |
310 |
ccaattccatctgggcactg-ccctcccattgccgtacataaatatagaaaaatccacaaccttcaagatctgattttgtttatttgagttgtttgattt |
408 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26981820 |
ccaattccatctgggcactgcccctcccattgccgtacataaatatagaaaaatccacaaccttcaagatctgattttgtttatttgagttgtttgattt |
26981919 |
T |
|
| Q |
409 |
taatttgatttatgggttataggtgatgaagattttgaagagtttttaatttcagtaattgaattgttgagttttaattctgagttaaaggttgaatgt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
26981920 |
taatttgatttatgggttataggtgatgaagattttgaagagtttttaatttctgtaattgaattgttgagttttaattctgagttgaagattgaatgt |
26982018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 6680024 - 6679949
Alignment:
| Q |
188 |
tatgagatattttgtagtcatgggtttgaaaggatttttaagaaa-attctttatgtgatgatgaatgttgttgtt |
262 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| | ||||| || |||||||||||||||||| |||||||| |
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|
| T |
6680024 |
tatgagaaattttgtagtgatgggtttgaaaggatttctcagaaatatgctttatgtgatgatgaatattgttgtt |
6679949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 6679711 - 6679667
Alignment:
| Q |
375 |
agatctgattttgtttatttgagttgtttgattttaatttgattt |
419 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||||||||||||| |
|
|
| T |
6679711 |
agatctgattctgtttgtttgagttgtttagttttaatttgattt |
6679667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 49085953 - 49085897
Alignment:
| Q |
207 |
atgggtttgaaaggatttttaagaaaattctttatgtgatgatgaatgttgttgttt |
263 |
Q |
| |
|
||||||||||||||||||| | ||| | |||||||||||||||||||||||||||| |
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|
| T |
49085953 |
atgggtttgaaaggattttgaggaataagctttatgtgatgatgaatgttgttgttt |
49085897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 55125131 - 55125179
Alignment:
| Q |
375 |
agatctgattttgtttatttgagttgtttgattttaatttgatttatgg |
423 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
55125131 |
agatctgattctgtttgtttgagttgtttagttttaatttgatttatgg |
55125179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 12732683 - 12732731
Alignment:
| Q |
375 |
agatctgattttgtttatttgagttgtttgattttaatttgatttatgg |
423 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
12732683 |
agatctgattctgtttgtttgagttgtttagttttaatttgatttatgg |
12732731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 9430012 - 9429964
Alignment:
| Q |
375 |
agatctgattttgtttatttgagttgtttgattttaatttgatttatgg |
423 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||||| |||||||||| |
|
|
| T |
9430012 |
agatctgattttgtttgttagagttgtttagttttaatctgatttatgg |
9429964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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