View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19792_low_5 (Length: 213)
Name: NF19792_low_5
Description: NF19792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19792_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 2124877 - 2125048
Alignment:
| Q |
25 |
tttagttaaatcaccacctattgtgaaagcaccttctccaccattggtgaaaacaccaccatatcaatcaccaccagtgaaaccaacaccaccaattgtg |
124 |
Q |
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| T |
2124877 |
tttagttaaatcaccacctattgtgaaagcaccttctccaccattggtgaaaacaccaccatatcaatcaccaccagtgaaaccaacaccacctattgtg |
2124976 |
T |
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| Q |
125 |
aaatcacctccttctccaccattggtaaaatcaccaccttatcaatcaccacctattgttaaggcaccttct |
196 |
Q |
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| T |
2124977 |
aaatcacctccttctccaccattggtaaaatcaccaccttatcaatcaccacctattgttaaggcaccttct |
2125048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 2125057 - 2125149
Alignment:
| Q |
100 |
agtgaaaccaacaccaccaattgtgaaatcacctccttctccaccattggtaaaatcaccaccttatcaatcaccacctattgttaaggcacc |
192 |
Q |
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| T |
2125057 |
agtgaaaccaactccacctattgtgaaatcacctccttctcctcctttggtgaaaacaccaccttatcaatcaccacctatagtgaaggcacc |
2125149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 2125070 - 2125134
Alignment:
| Q |
38 |
ccacctattgtgaaagcacct---tctccaccattggtgaaaacaccaccatatcaatcaccacc |
99 |
Q |
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| T |
2125070 |
ccacctattgtgaaatcacctccttctcctcctttggtgaaaacaccaccttatcaatcaccacc |
2125134 |
T |
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