View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_high_17 (Length: 292)
Name: NF19793_high_17
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_high_17 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 10351178 - 10350907
Alignment:
| Q |
9 |
tcacacttgcacacaaaatttttaataaagaaattatcctttaccctccattttatggatgtgtatccgtcaagtggtattagagtttggatcttagagt |
108 |
Q |
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| T |
10351178 |
tcacacttgcacacaaaatttttaataaagaaattattctttaccctccattttatggatgtgtatccgtcaagtggtattagagt-----------agt |
10351090 |
T |
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| Q |
109 |
tgttgaggaaaatcatgaagaacggcttcaagttttcttagaagtttgttaaaaagataattagatcttgaaatatcttttactaaaataattgttggtt |
208 |
Q |
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| T |
10351089 |
tgttgaggaaaatcatgaaga-cgacttcaagtttccttagaagtttgttaaaaagataattaaatcttgaaatatcttttactaaaataattgttggtt |
10350991 |
T |
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| Q |
209 |
ggttatttaggtaatggaataatgccacacatcgtaatggttactgttgttaagcaccttacaccagttcttgaaacatagaaa |
292 |
Q |
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| T |
10350990 |
ggttatttaggtaatggaataatgccacacatcgtaatggttactgttgttaagcaccttacaccagttcttgagacatagaaa |
10350907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 10355589 - 10355476
Alignment:
| Q |
103 |
tagagttgttgaggaaaatcatgaagaacggcttcaagttttcttagaagtttgttaaaaagataattagatcttgaaatatcttttactaaaataattg |
202 |
Q |
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| T |
10355589 |
tagagttgttgaggaaaatcatgaaga-cgacttcaagtttgcttagatgtttgttagaaagataattagatctggaaatatctttaactaaaataattg |
10355491 |
T |
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| Q |
203 |
-ttggttggttattt |
216 |
Q |
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| T |
10355490 |
tttggttggttattt |
10355476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 10355462 - 10355414
Alignment:
| Q |
202 |
gttggttggttatttaggtaatggaataatgccacacatcgtaatggtt |
250 |
Q |
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| T |
10355462 |
gttggttggttatttaggtaatggaataatgccacatctcgtaatggtt |
10355414 |
T |
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