View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_high_21 (Length: 279)
Name: NF19793_high_21
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 51539417 - 51539166
Alignment:
| Q |
12 |
agcacagataacttgtgaaaattggggatttgagataatattatttcaattattccaataccaatcatgtatggattattagaaaaacggcatggagctt |
111 |
Q |
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| T |
51539417 |
agcacagataacttgtgaaaattggggatttgagataatattatttcaattattccaataccaatcatgtatggattattagaaaaacggcatggagctt |
51539318 |
T |
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| Q |
112 |
caaacccattcttccggaagcaattgtttttaagtatcgtcctgaaatatacatgcaattaacatcattaatactataattacatgttataaaatttaat |
211 |
Q |
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| T |
51539317 |
caaacccattcttccggaagcaattgtttttaagtatcgtcctgaaatatacatgcaattaacatcattaatactataattacatgatataaaatttaat |
51539218 |
T |
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| Q |
212 |
aatttatgctttcttctatttgcaaaaacagaaaaacttacactatacttgt |
263 |
Q |
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| T |
51539217 |
aatttatgctttcttctatttgcaaaaacagaaaaacttacactatacttgt |
51539166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 257338 - 257242
Alignment:
| Q |
18 |
gataacttgtgaaaattggggatttgagataatattatttcaattattccaataccaatcatgtatggattattagaaaaacggcatggagcttcaa |
114 |
Q |
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| T |
257338 |
gataacttgtgaaaattggggatttgagacaagaagatttcaataattcccaaaccaatcatatagggattattagaaaattggcatggagcttcaa |
257242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 226968 - 227062
Alignment:
| Q |
18 |
gataacttgtgaaaattggggatttgagataatattatttcaattattccaataccaatcatgtatggattattagaaaaacggcatggagcttcaa |
114 |
Q |
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| T |
226968 |
gataacttgtgaaaattggggatttgagacaaaaagatttcaataattcccagaccaatca--tagggattattagaaaattggcatggagcttcaa |
227062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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