View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_high_26 (Length: 252)
Name: NF19793_high_26
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 33833176 - 33832950
Alignment:
| Q |
1 |
attatcccatcctccaactttctcctccaccctgttgatttttcttttcgaattatataatccaaaattcacaggaggaacaagaaaccaagaaaccagt |
100 |
Q |
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| T |
33833176 |
attatcccatcctccaactttctcct--accctattgatttttcttttcgaattatataatccaaaattcgcaggaggaacaagaaacca--------gt |
33833087 |
T |
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| Q |
101 |
agagatgaagnnnnnnnncactcatgannnnnnnnctacaaaagatggctgggaaggccaaataatcaaaacaaaaacaacttaactaaacattcaaaca |
200 |
Q |
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||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33833086 |
agagaagaa---aaaaaacactcatgattttttttctacaaaagatggctgggaaggccaaataatcaaaacaaaaacaacttaactaaacattcaaaca |
33832990 |
T |
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| Q |
201 |
agcatggcagatcattttaaagggtgcataactccatatt |
240 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| |
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| T |
33832989 |
agcatggcagatcattttaaaggatgcataactccatatt |
33832950 |
T |
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