View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_high_27 (Length: 250)
Name: NF19793_high_27
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40573904 - 40574143
Alignment:
| Q |
1 |
ttgtatttccccctgtattagtccattggacatgatatttatatttgtgtcgatgtaaatatgggatttgcaagtgaacttgtgttatgctttggtaggt |
100 |
Q |
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| T |
40573904 |
ttgtatttccccctgtattagtccattggacatgatatttatatttgtctcgatgtaaatatgggatttccaagtgaacttgtgttatgctttggtaggt |
40574003 |
T |
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| Q |
101 |
ttctccaactatgttgctaaatggcttttcactctcaaaacaacattaattccacctttacaagcatatgagttcaataatatttattttcgttcttcta |
200 |
Q |
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| T |
40574004 |
ttctccaactatgttgctaaatggcttttcactctcaaaacaacattaattccacctttacaagcatacgagttcaataatatttattttcgttcttcta |
40574103 |
T |
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| Q |
201 |
tgacaaatttcttcatatgcataaattgttacaatctgtg |
240 |
Q |
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| T |
40574104 |
tgacaaatttcttcatatgcataaattgttacaatctgtg |
40574143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 40569303 - 40569407
Alignment:
| Q |
1 |
ttgtatttccccctgtattagtccattggacatgatatttatatttgtgtcgatgtaaatatgggatttgcaagtgaacttgtgttatgctttggtaggt |
100 |
Q |
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| T |
40569303 |
ttgtattttcccctgtattggtctattgcacatgatattcatatttgtatcgatgtaaaaataggatttgcaattgagtttgtgttatgctttggtaggt |
40569402 |
T |
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| Q |
101 |
ttctc |
105 |
Q |
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||||| |
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| T |
40569403 |
ttctc |
40569407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 40569411 - 40569497
Alignment:
| Q |
141 |
caacattaattccacctttacaagcatatgagttcaataatatttattttcgttcttctatgacaaatttcttcatatgcataaatt |
227 |
Q |
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| T |
40569411 |
caacattagttccacctttagaagcatattatttcagtaatatttattttcattcttatgtgacaaatttcttcatatgaataaatt |
40569497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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