View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19793_high_34 (Length: 230)
Name: NF19793_high_34
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_high_34 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 46223214 - 46223416
Alignment:
| Q |
13 |
gaagaatatgagttataaaaaccgtagtaggaaggaacgaggtagtggtgattcatggttaagtggggaattaaggagagtgagttggaatagttatgat |
112 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46223214 |
gaagaaaatgagttataaaaaccgtagtaggaaggaacgaggtagtggtgattcatggttaagtggggaattaaggagagtgagttggaatagttatgat |
46223313 |
T |
|
| Q |
113 |
tcatgtaatagtggagaaattcataagagtggtgaaattagtagtactccaagtatgagaggaactgttttttatgttgctcctgaaaatggttatagtg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46223314 |
tcatgtaatagtggagaaattcataagagtggtgaaattagtagtactccaagtatgagaggaactgttttttatgttgctcctgaaaatggttatagtg |
46223413 |
T |
|
| Q |
213 |
atg |
215 |
Q |
| |
|
||| |
|
|
| T |
46223414 |
atg |
46223416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 226673 - 226599
Alignment:
| Q |
121 |
tagtggagaaattcataagagtggtgaaattagtagtactccaagtatgagaggaactgttttttatgttgctcc |
195 |
Q |
| |
|
||||||||| |||| |||||||||| | |||||||| ||||||||||||||||| |||| |||||||||||| |
|
|
| T |
226673 |
tagtggagatattccaaagagtggtggtgtgagtagtacaccaagtatgagaggaaccgtttgttatgttgctcc |
226599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 12952825 - 12952763
Alignment:
| Q |
137 |
aagagtggtgaaattagtagtactccaagtatgagaggaactgttttttatgttgctcctgaa |
199 |
Q |
| |
|
|||||||||| ||| ||||| || || ||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
12952825 |
aagagtggtggaataagtagcacaccgagtatgagaggaactgtttgttacattgctcctgaa |
12952763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University