View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19793_high_37 (Length: 225)

Name: NF19793_high_37
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19793_high_37
NF19793_high_37
[»] chr1 (9 HSPs)
chr1 (1-209)||(8936251-8936459)
chr1 (1-209)||(8959772-8959980)
chr1 (1-209)||(8924610-8924818)
chr1 (3-75)||(8945879-8945951)
chr1 (1-92)||(9245128-9245219)
chr1 (13-92)||(9335503-9335582)
chr1 (3-86)||(9475367-9475450)
chr1 (1-97)||(9306908-9307004)
chr1 (29-86)||(9359247-9359304)
[»] chr6 (1 HSPs)
chr6 (13-86)||(15912868-15912941)
[»] chr3 (1 HSPs)
chr3 (1-97)||(9168393-9168486)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 8936459 - 8936251
Alignment:
Q  1 ctatgtgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactattacttatac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8936459 ctatgtgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattgaagagggtgattgctccaccattcctcactattacttatac 8936360  T
Q  101 aattataatttcaccagctcttatatctacgattctgttgatccatatcaaacataccagagaagaatagttgatactactatatatgaaaatgcagaag 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8936359 aattataatttcagcagctcttatatctacgattctgttgatccatatcaaacttaccagagaagaatagttgatactactatatatgaaaatgcagaag 8936260  T
Q  201 ctcttactt 209  Q
    |||||||||    
T  8936259 ctcttactt 8936251  T

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Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 8959980 - 8959772
Alignment:
Q  1 ctatgtgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactattacttatac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  8959980 ctatgtgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattgaagagggtgattgctccaccattcctcactattacttgtac 8959881  T
Q  101 aattataatttcaccagctcttatatctacgattctgttgatccatatcaaacataccagagaagaatagttgatactactatatatgaaaatgcagaag 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| || || ||  ||    
T  8959880 aattataatttcagcagctcttatatctacgattctgttgatccatatcaaacttaccagagtagaatagttgatactactagatataaatattcaccag 8959781  T
Q  201 ctcttactt 209  Q
    |||||||||    
T  8959780 ctcttactt 8959772  T

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Target: chr1; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 8924818 - 8924610
Alignment:
Q  1 ctatgtgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactattacttatac 100  Q
    ||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||| ||||||||||||||||| || |||||| |||||||||||||    
T  8924818 ctatgtgaaatcaatcaactacaataactacacaatcagaatagttgatcccggaattgaagagggtgattgctcctcctttcctcgctattacttatac 8924719  T
Q  101 aattataatttcaccagctcttatatctacgattctgttgatccatatcaaacataccagagaagaatagttgatactactatatatgaaaatgcagaag 200  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || || ||  ||    
T  8924718 aattataatttcagcagctcttatatcttcgattctgttgatccatatcaaacataccagagcagaatagttgatactactagatataaatattcaccag 8924619  T
Q  201 ctcttactt 209  Q
    |||||||||    
T  8924618 ctcttactt 8924610  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 8945951 - 8945879
Alignment:
Q  3 atgtgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctc 75  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||  |||| |||||||||||    
T  8945951 atgtaaaatcaatcaactacaataactacacaattcggttagttgatcctggaataaaagaaggtgattgctc 8945879  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 9245128 - 9245219
Alignment:
Q  1 ctatgtgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactatt 92  Q
    |||||||||  ||||||||||||| ||||||||||||  ||||||||||||||||||| ||||||||  ||||||| || |||||| |||||    
T  9245128 ctatgtgaaggcaatcaactacaacaactacacaattttgttagttgatcccggaattgaagagggtagttgctcctcccttcctcgctatt 9245219  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 9335582 - 9335503
Alignment:
Q  13 aatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactatt 92  Q
    |||||||||||  |||||||||||||||||||||||||| |||||| |||| ||||||| |||| ||||||||| |||||    
T  9335582 aatcaactacataaactacacaattcggttagttgatccaggaattgaagaaggtgattactcctccattcctcgctatt 9335503  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 9475367 - 9475450
Alignment:
Q  3 atgtgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctc 86  Q
    ||||||| |||||||||||| |||||||||||||  |  |||||||||| ||||||||||||| |||||||| | |||||||||    
T  9475367 atgtgaagtcaatcaactacgataactacacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctc 9475450  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 9306908 - 9307004
Alignment:
Q  1 ctatgtgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactattactta 97  Q
    |||||||||||||||||||||||  |||||| ||||  |  |||||||||  ||||||||||| |||||||||||| |||| |||| ||||| ||||    
T  9306908 ctatgtgaaatcaatcaactacagaaactactcaatgagagtagttgatcttggaattcaagaaggtgattgctcctccatgcctcgctatttctta 9307004  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 9359304 - 9359247
Alignment:
Q  29 tacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctc 86  Q
    |||||||||||| |||||||||| | |||| |||||||| |||||||| |||||||||    
T  9359304 tacacaattcggctagttgatccagtaattgaagagggtaattgctcctccattcctc 9359247  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 15912868 - 15912941
Alignment:
Q  13 aatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctc 86  Q
    ||||||||| || |||||||||||| ||||||||||| ||||  | |||||||||||||||||| |||||||||    
T  15912868 aatcaactataaaaactacacaattaggttagttgatgccgggttgcaagagggtgattgctcctccattcctc 15912941  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 9168486 - 9168393
Alignment:
Q  1 ctatgtgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactattactta 97  Q
    |||||||||||||||||||||||| |||||||||||  |  |||||||||| |||||  |||| ||||||||   ||||||||||| ||||| ||||    
T  9168486 ctatgtgaaatcaatcaactacaaaaactacacaatcagagtagttgatcctggaatagaagaaggtgattg---caccattcctcgctatttctta 9168393  T

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