View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_high_41 (Length: 215)
Name: NF19793_high_41
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 14574507 - 14574696
Alignment:
| Q |
17 |
aaaacatgaactcaacatttcgcagaacaaatcaagtgattcttgtggagattggcattgcactaatccacttatcatactgtccaagaagcaatgtcct |
116 |
Q |
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| T |
14574507 |
aaaacatgaactcaatatttcccagaacaaatcaagtgattcttgtggagattggcattgcactaatccacttatcatactgtccaagaagcaatgtcct |
14574606 |
T |
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| Q |
117 |
tttcaggaatctcatcaaataaccgttttgcatcggtcacagactcacactgcatatacatattcatctgagtattgtatccaggaccta |
206 |
Q |
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| T |
14574607 |
tttcaggaatctcatcaaacaaccgttttgcatcggtcacagactcacactgcatatacatatccatcagagtattgcatccaggaccta |
14574696 |
T |
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Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 977422 - 977245
Alignment:
| Q |
17 |
aaaacatgaactcaacatttcgcagaacaaatcaagtgattcttgtggagattggcattgcactaatccacttatcatact-gtccaagaagcaatgtcc |
115 |
Q |
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||||| ||||| ||||||||| |||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
977422 |
aaaacctgaacccaacatttcatagaacaaatcaagtgattcttgtggacactggtattgcactaatccacttatcatactagtccaagaaacaatgtcc |
977323 |
T |
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| Q |
116 |
ttttcaggaatctcatcaaataaccgttttgcatcggtcacagactcacactgcatatacatattcatctgagtattg |
193 |
Q |
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|||||||||||||||||||| || || || ||||| ||||| |||||||||| || |||||||| |||| ||||||| |
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| T |
977322 |
ttttcaggaatctcatcaaacaatcgcttcgcatcagtcacggactcacacttcacatacatatccatcaaagtattg |
977245 |
T |
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