View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_1 (Length: 683)
Name: NF19793_low_1
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 1 - 669
Target Start/End: Complemental strand, 39821762 - 39821095
Alignment:
| Q |
1 |
acacatgagcaacactacaagacaaaagaaaaagtttcccagctggtaccttcagaatcaaatgggaaaaggacagttgaattaattgtagaatgtagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39821762 |
acacatgagcaacactacaagacaaaagaaaaagtttcccagctggtaccttcagaatcaaatgggaaaaggacagttgaattaattgtagaatgtagac |
39821663 |
T |
|
| Q |
101 |
ccacaaaaatgaaaccaagaagtattaaccttagagaatttgaatccaattattagaccaaaatctacttctaggcatgtgataatgacaatacagaggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39821662 |
ccacaaaaatgaaaccaagaagtattaaccttagagaatttgaatccaattattagaccaaaatctacttctaggcatgtgataatgacaatacagaggg |
39821563 |
T |
|
| Q |
201 |
nnnnnnnttaagatttgttcttaaagtttatattatagtgggtcattactcattagatcaatttttgtctttctgcctaatttctattcattgagtcctc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39821562 |
aaaaaaattaagatttgttcttaaagtttatattatagtgggtcattactcattagatcaatttttgtctttctgcctaatttctattcattgagtcctc |
39821463 |
T |
|
| Q |
301 |
actacatttattctcttcaccttagaaaaagaaaaatcaccctaatgtatccggtgaatttgacaaaattacgatgagactgtgattttgctgacatatg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39821462 |
actacatttattctcttcaccttagaaaaagaaaaatcaccctaatgtatccggtgagtttgacaaaattacgatgagactgtgattttgccgacatatg |
39821363 |
T |
|
| Q |
401 |
attctacaaactcaccgtcggtccaaa--cattcataaaaaaccaaaattgaatagtaaaaacacacacaagaaacagaatattaccattcagtagcatg |
498 |
Q |
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| T |
39821362 |
attctacaaactcaccg-cggtccaaaaacattcatataaaaccaaaaatgaatagtaaaaacacaca--agaaacagaatattaccattcagtagcatg |
39821266 |
T |
|
| Q |
499 |
ccttatgcttgagcttggacgaaagctcctcttccctgaaacactaggcttaaattcacctacagtgacaactcccatttccacaaaatctggcaaattt |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39821265 |
ccttatgcttgagcttggacgaaagctcctcttccctgaaacactaggcttaaattcacctacagtgacaactcccatttccacaaaatctggcaaattt |
39821166 |
T |
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| Q |
599 |
tgatacctttgcaccccactagtttaagtaatgtcactctttgactgaagtcactatgttaacaactcatt |
669 |
Q |
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| T |
39821165 |
tgatacctttgcaccccactagtttaagtaatgtcactctttgactgaagtcactatgttaacaactcatt |
39821095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 482 - 578
Target Start/End: Original strand, 44050225 - 44050321
Alignment:
| Q |
482 |
taccattcagtagcatgccttatgcttgagcttggacgaaagctcctcttccctgaaacactaggcttaaattcacctacagtgacaactcccattt |
578 |
Q |
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||||||||||| ||||| ||||||||||| ||||||||||| |||| | ||||||||||||||||| |||||||| | ||| ||||||||||||| |
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| T |
44050225 |
taccattcagtggcatgtcttatgcttgaacttggacgaaaagtccttcttcctgaaacactaggcttcaattcaccaagagttacaactcccattt |
44050321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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