View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_10 (Length: 396)
Name: NF19793_low_10
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_10 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 6226005 - 6225628
Alignment:
| Q |
18 |
cgtattgactctcaacttttaaactctaccattgttacttaaggagtatatgtatatgtatatgtaatctgtttaaattgactaatttgagtttctagac |
117 |
Q |
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| T |
6226005 |
cgtattgactctcaacttttaaactctaccattgttacttaaggagtatatgtatatgtatatgtaatctgtttaaattgactaatttgagtttctagac |
6225906 |
T |
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| Q |
118 |
aatcaatttaaaagtacttgaaactgattttcaatcctaaaaatctacaaaacctatctggctgatggttgagtgaatggtcggctactgaatatcaagt |
217 |
Q |
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| T |
6225905 |
aatcaatttaaaagtacttgaaactgattttcaatcctaaaaatctacaaaacctatctggctgatggttgagtgaacggtcggctactgaatatcaagt |
6225806 |
T |
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| Q |
218 |
aagtcaggtcctggcatggcggtggaagcagtggagagatgaggtctgccgcaagaaaagtgagcagtgaacactacattttgagaaccgtattttgaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6225805 |
aagtcaggtcctggcatggcggtggaagcagtggagagatgaggtctgccgcaagaaaagtgagcagtgaacactacattttgagaaccgtattttgaaa |
6225706 |
T |
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| Q |
318 |
tagaaatcctaaattttattgaatatnnnnnnnnccttttacaaatccaaccacaatcacactcttacagacacagta |
395 |
Q |
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| T |
6225705 |
tagaaatcctaaattttattgaatataaaaaaaaccttttacaaatccaaccacaatcacactcttacagacacagta |
6225628 |
T |
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Target: scaffold0405 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 13024 - 13083
Alignment:
| Q |
214 |
aagtaagtcaggtcctggcatggcggtggaagcagtggagagatgaggtctgccgcaaga |
273 |
Q |
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| T |
13024 |
aagtgagtcagctcctggcatggcggtggaagcaatgtaaagatgaggtctgccgcaaga |
13083 |
T |
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