View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_11 (Length: 389)
Name: NF19793_low_11
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 14246500 - 14246136
Alignment:
| Q |
10 |
gcaaaggagatagacaacatagcgcttgtttgtgtcggcagttatttgatctacttctattaattagagttttggagaatttacagctcagcggacattg |
109 |
Q |
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| T |
14246500 |
gcaaaggagatagacaacatagcgcttgtttgtgtcggcaactatttgatctacttctattaattagagttttggagaatttacagctcagcggacattg |
14246401 |
T |
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| Q |
110 |
gcacacgaaaaatacaatcaacccacataaccaaacatgacattacgtgctctttgctaggagaaatatgcaacaagaacgacactgatgcacaaacata |
209 |
Q |
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| T |
14246400 |
gcacacgaaaaatacaatcaactcacataaccaaacatgacattacgtgctctttgctaggagaaatatgcaacaagaacgacactgatgcacaaacata |
14246301 |
T |
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| Q |
210 |
aatggggcaaacctcgtaattgtcgtattcaaggtgagtaagaaaactcaacccattacgggttcatgattcccacaaatagcattgacaattgaatcac |
309 |
Q |
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| T |
14246300 |
aatggggcaaacatcgtaattgtcgtattcaaggtgagtaagaaaactcaacccattacgggttcatgattcccacaaatagcattgacaattgaatcac |
14246201 |
T |
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| Q |
310 |
cagtcacaattgagctctggcgagaggtaatgagtaatataaaacatcataaatgtgtaaatcct |
374 |
Q |
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| T |
14246200 |
cagtcacaattgagctctggcgagaggtaatgagtaatataaaacatcataaatgtgtaaatcct |
14246136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 14379747 - 14380078
Alignment:
| Q |
14 |
aggagatagacaacatagcgcttgtttgtgtcggcagttatttgatctacttctattaattagagttttggagaatttacagctcagcggacattggcac |
113 |
Q |
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| T |
14379747 |
aggagatagacatcataacgcttgtttgatgcagcaactatttgaccaacttctactaattagagttttggtcaatttacaactcaacaaacttcgg-at |
14379845 |
T |
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| Q |
114 |
acgaaaaatacaatcaacccacataaccaaacatgacattacgtgctctttgctaggagaaatatgcaacaagaacgacactgatgcacaaacataaatg |
213 |
Q |
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||| ||||| |||||||| | |||||||||||||||||||| |||||||||| ||| | ||||||||||||| |||||||| ||||||||||||||||| |
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| T |
14379846 |
gcgagaaataaaatcaacctatataaccaaacatgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaacataaatg |
14379945 |
T |
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| Q |
214 |
gggcaaacctcgtaattgtcgtattcaaggtgagtaagaaaactcaacccattacgggttcatgattcccacaaatagcattgacaattgaatcaccagt |
313 |
Q |
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| T |
14379946 |
gcgcaaacctcataattgttgtagtcaaggtgagtaagaaaactcaacccattagaggttcatgattcccacaaatagcattgacaattgaatcaccagt |
14380045 |
T |
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| Q |
314 |
cacaattgagctctggcgagaggtaatgagtaa |
346 |
Q |
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||||||| |||||| || ||||||| ||||||| |
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| T |
14380046 |
cacaattaagctctagcaagaggtagtgagtaa |
14380078 |
T |
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