View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_12 (Length: 389)
Name: NF19793_low_12
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 40 - 376
Target Start/End: Complemental strand, 4832567 - 4832231
Alignment:
| Q |
40 |
aactcttgtagtagaaataaacatttcttttatatcatttttatagtccaaaggccagcgtacttatctcttcctatactttgctatcatatattccaaa |
139 |
Q |
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| T |
4832567 |
aactcttgtagtagaaataaacatttcttttatatcatttttatagtccaaaggccagcgtacttatctcttcctatactttgctatcatatattccaaa |
4832468 |
T |
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| Q |
140 |
gtcataaataacatcgatggatttgaatacgaagggtatgttgaactcaaattttttatgtaaatgtgtttgccaatgcacttctgcactaaaaatttat |
239 |
Q |
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| T |
4832467 |
gtcataaataacatcgatggatttgaatacgaagggtatgttgaactcaaattttttatgtaaatgtgtttgccaatgcacttctgcactaaaaatttat |
4832368 |
T |
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| Q |
240 |
gacatatacacgtcgatattaatgtttgtagttttcacagctatgcacacacaaatacagcaacaaaataagaaacatactgaaccgaatatcgtcaaaa |
339 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4832367 |
gacttatacacgtcaatattaatgtttgtagttttcacagctatgcacacacaaatacagcaacaaaataagaaacatactgaaccgaatatcgtcaaaa |
4832268 |
T |
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| Q |
340 |
atagaaataccaagccaaaataagtaagtactaaaac |
376 |
Q |
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|||||||||| ||||||||||||| |||||||||||| |
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| T |
4832267 |
atagaaatactaagccaaaataagcaagtactaaaac |
4832231 |
T |
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