View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_13 (Length: 384)
Name: NF19793_low_13
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 40573879 - 40573512
Alignment:
| Q |
1 |
gaagatatattaatatctaatcctgaatattaatatcaactaatcatcttccaccaatcaatgacatcgaaatctggtttaagctataggattcataaga |
100 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40573879 |
gaagatatattaacatctaatcctgaatattaatatcaactaatcatcttccaccaatcaatgacatcgaaatctggtttaagctataggattcataaga |
40573780 |
T |
|
| Q |
101 |
attaatgccacttccaccaacgacatcttcaatgtttttaatagaccgtgctgttataagcaagttttcagcctcttctgaagataaattgtcgcttccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40573779 |
attaatgccacttccaccaacgacatcttcaatgtttttaatagaccgtgctgttttaagcaagttttcagcctcttctgaagataaattgtcgcttccc |
40573680 |
T |
|
| Q |
201 |
caacatcgctcttcaacaactaatattccctcaagttccattgccacttctttcatggttggtctgtcctcgcccttcacccttaaacaccgttctgcaa |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40573679 |
caacgtcgctcttcaacaactaatattccctcaagttccattgccacttctttcatggttggtctgtcctcgcccttcacccttaaacaccgttctgcaa |
40573580 |
T |
|
| Q |
301 |
tataggcaacctcttttagttgctcaatatttggctcatctatatttttgtccaaaatatgaagtaac |
368 |
Q |
| |
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||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
40573579 |
tatgggcaacctcttttagttgctcaatatttgcctcatctatatttttgtccaaaatatgaagtaac |
40573512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 40569278 - 40568911
Alignment:
| Q |
1 |
gaagatatattaatatctaatcctgaatattaatatcaactaatcatcttccaccaatcaatgacatcgaaatctggtttaagctataggattcataaga |
100 |
Q |
| |
|
||||||| ||| | ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
40569278 |
gaagatagattcacatctaatcctgaatactaatatcaaccaatcatcttccaccaatcaatgacatcgaaatctggtttaagctatatgattcagaaga |
40569179 |
T |
|
| Q |
101 |
attaatgccacttccaccaacgacatcttcaatgtttttaatagaccgtgctgttataagcaagttttcagcctcttctgaagataaattgtcgcttccc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
40569178 |
attaatgccacttccaccaacaacatcttcaacgtttttaatggaccgtgctgttttaagcaacttttcagtctcttctgaagataaattgtcgcttccc |
40569079 |
T |
|
| Q |
201 |
caacatcgctcttcaacaactaatattccctcaagttccattgccacttctttcatggttggtctgtcctcgcccttcacccttaaacaccgttctgcaa |
300 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| |
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| T |
40569078 |
caacgacgctcttcactaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcacccttcacccttaaacaccgttctacaa |
40568979 |
T |
|
| Q |
301 |
tataggcaacctcttttagttgctcaatatttggctcatctatatttttgtccaaaatatgaagtaac |
368 |
Q |
| |
|
|| |||||||| |||||||||||||||| | | ||||||| ||||||||||||||||||||||| |
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|
| T |
40568978 |
taagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagtaac |
40568911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 28 - 368
Target Start/End: Complemental strand, 40580306 - 40579969
Alignment:
| Q |
28 |
tattaatatcaactaatcatcttccaccaatcaatgacatcgaaatctggtttaagctataggattcataagaattaatgccacttccaccaacgacatc |
127 |
Q |
| |
|
|||||||||| | |||||||||||||||||| || ||||||||||||||||||||||| || || |||||||||| |||||||||||| |||| |
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|
| T |
40580306 |
tattaatatccatcaatcatcttccaccaatcgat---atcgaaatctggtttaagctatatgaaccagaagaattaatatcacttccaccaataccatc |
40580210 |
T |
|
| Q |
128 |
ttcaatgtttttaatagaccgtgctgttataagcaagttttcagcctcttctgaagataaattgtcgcttccccaacatcgctcttcaacaactaatatt |
227 |
Q |
| |
|
|| || ||||| | || ||||||| | ||||||||||||| |||||||||||| |||| ||| |||||||||| |||||||| |||||||||| |
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|
| T |
40580209 |
ttgaacattttttacggattctgctgttttgagcaagttttcagtctcttctgaagacaaatagtcacttccccaacggaactcttcaataactaatatt |
40580110 |
T |
|
| Q |
228 |
ccctcaagttccattgccacttctttcatggttggtctgtcctcgcccttcacccttaaacaccgttctgcaatataggcaacctcttttagttgctcaa |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
40580109 |
ccctcaagttccattgccacttctttcatagttggtctgtcctctcccttcacccttaaacaccgttctgcaatatcggcaacctctttaagttgctcaa |
40580010 |
T |
|
| Q |
328 |
tatttggctcatctatatttttgtccaaaatatgaagtaac |
368 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40580009 |
tatttgtctcatctatatttttgtccaaaatatgaagtaac |
40579969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 209 - 372
Target Start/End: Complemental strand, 40598578 - 40598415
Alignment:
| Q |
209 |
ctcttcaacaactaatattccctcaagttccattgccacttctttcatggttggtctgtcctcgcccttcacccttaaacaccgttctgcaatataggca |
308 |
Q |
| |
|
||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||||| |||| |
|
|
| T |
40598578 |
ctcttcagtaactaatattccctctagtcccattgccacttctttcatggttggtctttcctcactcttcacccttaaacacctttctgcaattagggca |
40598479 |
T |
|
| Q |
309 |
acctcttttagttgctcaatatttggctcatctatatttttgtccaaaatatgaagtaactgat |
372 |
Q |
| |
|
|| || ||||| || ||||||||| |||||||||||||||||| | |||||||||||| |||| |
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|
| T |
40598478 |
acttcctttagatgttcaatatttttctcatctatatttttgtctagaatatgaagtaattgat |
40598415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 332
Target Start/End: Complemental strand, 40591976 - 40591853
Alignment:
| Q |
209 |
ctcttcaacaactaatattccctcaagttccattgccacttctttcatggttggtctgtcctcgcccttcacccttaaacaccgttctgcaatataggca |
308 |
Q |
| |
|
|||||||| |||||||||||| || ||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||| ||||||||| |||| |
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|
| T |
40591976 |
ctcttcaataactaatattccttccagttccattgccacttctttcatggatggtctttcctcactgttcacccttaaacacctttctgcaattagggca |
40591877 |
T |
|
| Q |
309 |
acctcttttagttgctcaatattt |
332 |
Q |
| |
|
|| || ||||| ||||||| |||| |
|
|
| T |
40591876 |
acttcctttagatgctcaacattt |
40591853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 301
Target Start/End: Complemental strand, 40602627 - 40602534
Alignment:
| Q |
208 |
gctcttcaacaactaatattccctcaagttccattgccacttctttcatggttggtctgtcctcgcccttcacccttaaacaccgttctgcaat |
301 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||| ||||| | |||| | ||||||||| ||||||||| |
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|
| T |
40602627 |
gctcttcaataactaatattccctctagttccactgccacttctttcatggtcggtctttcctcactgttcatctttaaacacctttctgcaat |
40602534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 367
Target Start/End: Complemental strand, 40582144 - 40582056
Alignment:
| Q |
279 |
acccttaaacaccgttctgcaatataggcaacctcttttagttgctcaatatttggctcatctatatttttgtccaaaatatgaagtaa |
367 |
Q |
| |
|
||||| ||||| | || |||||||| || ||| || |||||| ||||||||||| ||||||||||||||||| || || ||||||||| |
|
|
| T |
40582144 |
accctgaaacaacattttgcaatatgggaaacttcctttagtggctcaatattttcctcatctatatttttgttcataacatgaagtaa |
40582056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 40602775 - 40602723
Alignment:
| Q |
34 |
tatcaactaatcatcttccaccaatcaatgacatcgaaatctggtttaagcta |
86 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
40602775 |
tatcaactaatcatattccaccaatcaatgatatcctaatctgctttaagcta |
40602723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 40582288 - 40582217
Alignment:
| Q |
49 |
ttccaccaatcaatgacatcgaaatctggtttaagctataggattcataagaattaatgccacttccaccaa |
120 |
Q |
| |
|
||||||||||||||||||| ||||| |||| || ||||| || ||| |||||||||| |||||||| |||| |
|
|
| T |
40582288 |
ttccaccaatcaatgacattgaaatttggtatatgctatcagaatcagaagaattaattccacttccgccaa |
40582217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 195 - 371
Target Start/End: Original strand, 2014652 - 2014828
Alignment:
| Q |
195 |
cttccccaacatcgctcttcaacaactaatattccctcaagttccattgccacttctttcatggttggtctgtcctcgcccttcacccttaaacaccgtt |
294 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||||||| ||||| ||||| |||||||||| |||||||| || |
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|
| T |
2014652 |
cttccccaacggtgctcttcaataactaatattccctccagttccgctgccacttctttcatggtgggtctttcctcacccttcacccgtaaacaccttt |
2014751 |
T |
|
| Q |
295 |
ctgcaatataggcaacctcttttagttgctcaatatttggctcatctatatttttgtccaaaatatgaagtaactga |
371 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| || | ||| || |||||||||||||||||||||||||||||| |
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|
| T |
2014752 |
ctgcaataagggcaacctcctttagttgctcaatgttcgcctcgtcaatatttttgtccaaaatatgaagtaactga |
2014828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 2014505 - 2014571
Alignment:
| Q |
36 |
tcaactaatcatcttccaccaatcaatgacatcgaaatctggtttaagctataggattcataagaat |
102 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | ||||||||||| ||| || |||||| |||||| |
|
|
| T |
2014505 |
tcaactaatcatcttccaccaacaaatgacattgtaatctggtttatgctgtatgattcagaagaat |
2014571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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