View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_14 (Length: 377)
Name: NF19793_low_14
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 220 - 362
Target Start/End: Original strand, 25992164 - 25992306
Alignment:
| Q |
220 |
cacatattcatgtaatttacttgtcttgcagaggcttcaaattggatactgacggaaatagacttttaannnnnnnctttctcataattgataagtatct |
319 |
Q |
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| T |
25992164 |
cacatattcatgtaatttacttgtcttgcagaggcttcaaattggatactgacggaaatagacttttaatttttttctttctcataactgataagtatct |
25992263 |
T |
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| Q |
320 |
gctataataaaaaattacaagatttaaaacagtaataattatt |
362 |
Q |
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| T |
25992264 |
gctataataaaaatttacaagatttaaaacagtaataattatt |
25992306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 25986468 - 25986530
Alignment:
| Q |
220 |
cacatattcatgtaatttacttgtcttgcagaggcttcaaattggatactgacggaaatagact |
283 |
Q |
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||||| |||||||||||||||||||||||| |||||| | | |||||| || |||||||||||| |
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| T |
25986468 |
cacattttcatgtaatttacttgtcttgcataggcttgagactggata-tggcggaaatagact |
25986530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 25988235 - 25988286
Alignment:
| Q |
299 |
tctcataattgataagtatctgctataataaaaaattacaagatttaaaaca |
350 |
Q |
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| T |
25988235 |
tctcataattgataagtatctgatataataaaaatttccaatattttaaaca |
25988286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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