View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19793_low_15 (Length: 359)

Name: NF19793_low_15
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19793_low_15
NF19793_low_15
[»] chr6 (19 HSPs)
chr6 (77-144)||(1694309-1694376)
chr6 (209-348)||(1694430-1694569)
chr6 (17-68)||(426483-426533)
chr6 (238-285)||(1684034-1684081)
chr6 (17-60)||(7801132-7801175)
chr6 (36-68)||(17327595-17327627)
chr6 (37-68)||(4878025-4878056)
chr6 (25-68)||(5732479-5732521)
chr6 (299-337)||(1684096-1684134)
chr6 (38-68)||(17841534-17841564)
chr6 (39-68)||(7723204-7723233)
chr6 (35-68)||(8389413-8389446)
chr6 (35-68)||(9025450-9025483)
chr6 (35-68)||(31385011-31385044)
chr6 (35-68)||(31959231-31959264)
chr6 (35-68)||(34595215-34595248)
chr6 (36-68)||(8365453-8365485)
chr6 (36-68)||(8805529-8805561)
chr6 (36-68)||(10339059-10339091)
[»] chr5 (18 HSPs)
chr5 (25-68)||(22423769-22423812)
chr5 (17-68)||(10298609-10298664)
chr5 (34-68)||(35017123-35017157)
chr5 (35-68)||(14873603-14873636)
chr5 (35-68)||(17123128-17123161)
chr5 (35-68)||(21191001-21191034)
chr5 (36-68)||(4105341-4105373)
chr5 (36-68)||(21576690-21576722)
chr5 (36-68)||(39268543-39268575)
chr5 (17-68)||(8420067-8420117)
chr5 (37-68)||(43001888-43001919)
chr5 (35-65)||(17088372-17088402)
chr5 (35-69)||(21194067-21194101)
chr5 (38-68)||(39698636-39698666)
chr5 (35-68)||(19820333-19820366)
chr5 (35-68)||(43564962-43564995)
chr5 (36-68)||(3966596-3966628)
chr5 (36-68)||(23015929-23015961)
[»] chr2 (18 HSPs)
chr2 (17-68)||(19536366-19536416)
chr2 (17-68)||(18255949-18255999)
chr2 (16-68)||(34221468-34221517)
chr2 (35-68)||(2438664-2438697)
chr2 (35-68)||(37419835-37419868)
chr2 (36-68)||(26769604-26769636)
chr2 (25-65)||(34691777-34691816)
chr2 (25-65)||(34714189-34714228)
chr2 (34-68)||(17776678-17776712)
chr2 (35-65)||(23354589-23354619)
chr2 (35-68)||(11223798-11223831)
chr2 (35-68)||(18840958-18840991)
chr2 (35-68)||(19942346-19942379)
chr2 (35-68)||(23058389-23058422)
chr2 (35-68)||(23354929-23354962)
chr2 (35-68)||(38117104-38117137)
chr2 (36-68)||(3444831-3444863)
chr2 (36-68)||(42511327-42511359)
[»] scaffold0027 (1 HSPs)
scaffold0027 (17-68)||(46722-46771)
[»] chr3 (15 HSPs)
chr3 (17-68)||(21256953-21257005)
chr3 (35-68)||(20503546-20503579)
chr3 (35-68)||(34185057-34185090)
chr3 (37-68)||(4990917-4990948)
chr3 (38-68)||(8789493-8789523)
chr3 (38-68)||(8842413-8842443)
chr3 (34-68)||(11610589-11610623)
chr3 (38-68)||(55401159-55401189)
chr3 (35-64)||(4987229-4987258)
chr3 (35-68)||(14979230-14979263)
chr3 (35-68)||(27505332-27505365)
chr3 (35-68)||(34910398-34910431)
chr3 (35-68)||(40052393-40052426)
chr3 (35-68)||(40993280-40993313)
chr3 (36-68)||(41961584-41961616)
[»] chr7 (17 HSPs)
chr7 (17-68)||(27945081-27945132)
chr7 (35-68)||(5409776-5409809)
chr7 (37-68)||(29763134-29763165)
chr7 (37-68)||(35862034-35862065)
chr7 (34-68)||(28973886-28973920)
chr7 (35-68)||(598289-598322)
chr7 (35-68)||(6490797-6490830)
chr7 (35-68)||(8842284-8842317)
chr7 (35-68)||(9778586-9778619)
chr7 (35-68)||(24339734-24339767)
chr7 (35-68)||(29812603-29812636)
chr7 (39-68)||(30813882-30813911)
chr7 (35-68)||(32287408-32287441)
chr7 (35-68)||(40287307-40287340)
chr7 (35-68)||(43027409-43027442)
chr7 (36-68)||(3991395-3991427)
chr7 (36-68)||(32093959-32093991)
[»] chr1 (21 HSPs)
chr1 (34-68)||(47989588-47989622)
chr1 (35-68)||(42359394-42359427)
chr1 (36-68)||(35702547-35702579)
chr1 (36-68)||(37598913-37598945)
chr1 (37-68)||(16297226-16297257)
chr1 (37-68)||(22947813-22947844)
chr1 (17-68)||(48450555-48450606)
chr1 (35-69)||(5898210-5898244)
chr1 (38-68)||(21365997-21366027)
chr1 (38-68)||(22515832-22515862)
chr1 (35-68)||(1486649-1486682)
chr1 (35-68)||(9828136-9828169)
chr1 (35-68)||(16812637-16812670)
chr1 (35-68)||(22881572-22881605)
chr1 (35-68)||(26830668-26830701)
chr1 (35-68)||(27965945-27965978)
chr1 (35-68)||(34741927-34741960)
chr1 (35-68)||(40917841-40917874)
chr1 (36-68)||(15765840-15765872)
chr1 (36-68)||(18556390-18556422)
chr1 (36-68)||(36878548-36878580)
[»] chr8 (10 HSPs)
chr8 (36-69)||(31109462-31109495)
chr8 (38-68)||(31514938-31514968)
chr8 (35-68)||(15816063-15816096)
chr8 (35-68)||(16987994-16988027)
chr8 (35-68)||(17751737-17751770)
chr8 (35-68)||(17760724-17760757)
chr8 (35-68)||(22652068-22652101)
chr8 (35-68)||(25566911-25566944)
chr8 (35-68)||(29510238-29510271)
chr8 (35-68)||(39820509-39820542)
[»] chr4 (20 HSPs)
chr4 (35-68)||(5775309-5775342)
chr4 (35-68)||(23292931-23292964)
chr4 (31-68)||(28470442-28470479)
chr4 (36-68)||(715550-715582)
chr4 (36-68)||(752876-752908)
chr4 (36-68)||(28084606-28084638)
chr4 (17-68)||(30298987-30299043)
chr4 (17-68)||(30327855-30327911)
chr4 (37-68)||(4383449-4383480)
chr4 (37-68)||(22440562-22440593)
chr4 (38-68)||(3064873-3064903)
chr4 (34-68)||(11596302-11596336)
chr4 (34-68)||(12895219-12895253)
chr4 (35-68)||(36635411-36635444)
chr4 (35-68)||(40784034-40784067)
chr4 (35-68)||(53381535-53381568)
chr4 (28-68)||(18844428-18844467)
chr4 (36-68)||(28964193-28964225)
chr4 (36-68)||(29205550-29205582)
chr4 (35-67)||(30094094-30094126)
[»] scaffold0793 (1 HSPs)
scaffold0793 (36-68)||(4826-4858)
[»] scaffold0475 (1 HSPs)
scaffold0475 (36-68)||(3390-3422)
[»] scaffold0004 (1 HSPs)
scaffold0004 (37-68)||(92905-92936)
[»] scaffold0652 (1 HSPs)
scaffold0652 (35-68)||(407-440)
[»] scaffold0009 (1 HSPs)
scaffold0009 (37-66)||(188483-188512)
[»] scaffold0003 (1 HSPs)
scaffold0003 (35-68)||(241686-241719)
[»] scaffold0086 (1 HSPs)
scaffold0086 (39-67)||(3024-3052)


Alignment Details
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 1694309 - 1694376
Alignment:
Q  77 catgatggaggttgtgaaaggtaaaaaatagccaattcttctcaataaaaccttggaatatgagagta 144  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1694309 catgatagaggttgtgaaaggtaaaaaatagccaattcttctcaataaaaccttggaatatgagagta 1694376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 209 - 348
Target Start/End: Original strand, 1694430 - 1694569
Alignment:
Q  209 ttgtaatgtcatcctgatttgtnnnnnnntcacctagataaaacctctaataaaatttgtaatatcatgctaatttgnnnnnnnnnnnnngaagtgccat 308  Q
    ||||||||||||||| ||||||       ||||||||||||| |||||||||||||||||||| |||||||||||||             ||||||||||    
T  1694430 ttgtaatgtcatcctaatttgtaaaaaaatcacctagataaatcctctaataaaatttgtaatgtcatgctaatttgaaaaaagaaaaaagaagtgccat 1694529  T
Q  309 aatcagatcagactacagtcacagctggaacatcattctt 348  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  1694530 aatcagatcagactacagtcacagctggagcatcattctt 1694569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 426533 - 426483
Alignment:
Q  17 aattacaagtgtcggtgtcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  426533 aattacaagtgtcggtgtcgg-acacgcctaatctgaggagtgtccgtgctt 426483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 1684034 - 1684081
Alignment:
Q  238 tcacctagataaaacctctaataaaatttgtaatatcatgctaatttg 285  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  1684034 tcacctagataaaacctctaataaaatttgtaatgtcatcctaatttg 1684081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 7801175 - 7801132
Alignment:
Q  17 aattacaagtgtcggtgtcgggacacgcctaatccgaggagtgt 60  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  7801175 aattacaagtgtcggtgtcgggacacgcctaatccgaagagtgt 7801132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 17327627 - 17327595
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||    
T  17327627 gggacacgcctaatccgaggagtgtccgtgctt 17327595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 4878025 - 4878056
Alignment:
Q  37 ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||    
T  4878025 ggacacgcctaatccgaggagtgtccgtgctt 4878056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 5732521 - 5732479
Alignment:
Q  25 gtgtcggtgtcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  5732521 gtgtcggtgtcgg-acacgcctaatccgaggagtgtccatgctt 5732479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 1684096 - 1684134
Alignment:
Q  299 gaagtgccataatcagatcagactacagtcacagctgga 337  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  1684096 gaagtgccataatcagatcagactgcagtcacaactgga 1684134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 17841564 - 17841534
Alignment:
Q  38 gacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||    
T  17841564 gacacgcctaatccgaggagtgtccgtgctt 17841534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 7723233 - 7723204
Alignment:
Q  39 acacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||    
T  7723233 acacgcctaatccgaggagtgtccgtgctt 7723204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 8389446 - 8389413
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| |||||||||||||||||||||||||    
T  8389446 cgggacacacctaatccgaggagtgtccgtgctt 8389413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 9025483 - 9025450
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||| |||||||||||||    
T  9025483 cgggacacgcctaatccgagaagtgtccgtgctt 9025450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 31385011 - 31385044
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||| ||||||||||||||||    
T  31385011 cgggacacgcctaatccaaggagtgtccgtgctt 31385044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 31959231 - 31959264
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| |||||||||||||||||||||||||    
T  31959231 cgggacacacctaatccgaggagtgtccgtgctt 31959264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 34595215 - 34595248
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| |||||||||||||||||||||||||    
T  34595215 cgggacacacctaatccgaggagtgtccgtgctt 34595248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 8365485 - 8365453
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||| |||||||||    
T  8365485 gggacacgcctaatccgaggagtctccgtgctt 8365453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 8805561 - 8805529
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||| ||||||||||||||||||||||||||    
T  8805561 gggacatgcctaatccgaggagtgtccgtgctt 8805529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 10339091 - 10339059
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||| |||||||||||||||||    
T  10339091 gggacacgcctaatcggaggagtgtccgtgctt 10339059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 22423812 - 22423769
Alignment:
Q  25 gtgtcggtgtcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  22423812 gtgtcggtgtctggacacgcctaatccgaggagtgtccgtgctt 22423769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 10298609 - 10298664
Alignment:
Q  17 aattacaagtgtcggtgtcg----ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  10298609 aattacaagtgtcggtgtcgtatcggacacgcctaatccgaggagtgtccgtgctt 10298664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 35017123 - 35017157
Alignment:
Q  34 tcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||||    
T  35017123 tcgggacacgcctaatccgaggagtgtccgtgctt 35017157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 14873603 - 14873636
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  14873603 cgggacacgcctaatccgaggagtgtccgtgctt 14873636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 17123128 - 17123161
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  17123128 cgggacacgcctaatccgaggagtgtccgtgctt 17123161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 21191034 - 21191001
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  21191034 cgggacacgcctaatccgaggagtgtccgtgctt 21191001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 4105341 - 4105373
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||    
T  4105341 gggacacgcctaatccgaggagtgtccgtgctt 4105373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 21576722 - 21576690
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||    
T  21576722 gggacacgcctaatccgaggagtgtccgtgctt 21576690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 39268575 - 39268543
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||    
T  39268575 gggacacgcctaatccgaggagtgtccgtgctt 39268543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 8420067 - 8420117
Alignment:
Q  17 aattacaagtgtcggtgtcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||| |||| |||||||| |||||||| |||||||||    
T  8420067 aattacaagtgtcggtgtc-ggacgcgcctaattcgaggagtatccgtgctt 8420117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 43001888 - 43001919
Alignment:
Q  37 ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||    
T  43001888 ggacacgcctaatccgaggagtgtccgtgctt 43001919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 17088372 - 17088402
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtg 65  Q
    |||||||||||||||||||||||||||||||    
T  17088372 cgggacacgcctaatccgaggagtgtccgtg 17088402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 21194101 - 21194067
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgcttt 69  Q
    |||| ||||||||||||||||||||||||||||||    
T  21194101 cggggcacgcctaatccgaggagtgtccgtgcttt 21194067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 39698636 - 39698666
Alignment:
Q  38 gacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||    
T  39698636 gacacgcctaatccgaggagtgtccgtgctt 39698666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 19820366 - 19820333
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||| |||||||||||||||||    
T  19820366 cgggacacgcctaatcagaggagtgtccgtgctt 19820333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 43564962 - 43564995
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||| |||||||||||||    
T  43564962 cgggacacgcctaatccgagaagtgtccgtgctt 43564995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 3966596 - 3966628
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| ||||||||||||||||||||||||    
T  3966596 gggacacgtctaatccgaggagtgtccgtgctt 3966628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 23015961 - 23015929
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||| ||||    
T  23015961 gggacacgcctaatccgaggagtgtccgagctt 23015929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 19536416 - 19536366
Alignment:
Q  17 aattacaagtgtcggtgtcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  19536416 aattacaagtgtcggtgtcgg-acacgcctaatccgaggagtgtccatgctt 19536366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 18255999 - 18255949
Alignment:
Q  17 aattacaagtgtcggtgtcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  18255999 aattagaagtgtcggtgtcgg-acacgcctaatccaaggagtgtccgtgctt 18255949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 34221517 - 34221468
Alignment:
Q  16 caattacaagtgtcggtgtcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||   |||||||||||||||||||||||| |||||||||    
T  34221517 caattacaagtgtcgg---cgggacacgcctaatccgaggagtttccgtgctt 34221468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 2438697 - 2438664
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  2438697 cgggacacgcctaatccgaggagtgtccgtgctt 2438664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 37419835 - 37419868
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  37419835 cgggacacgcctaatccgaggagtgtccgtgctt 37419868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 26769604 - 26769636
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||    
T  26769604 gggacacgcctaatccgaggagtgtccgtgctt 26769636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 34691816 - 34691777
Alignment:
Q  25 gtgtcggtgtcgggacacgcctaatccgaggagtgtccgtg 65  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  34691816 gtgtcggtgtcgg-acacgcctaatccgaggagtgtccgtg 34691777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 34714228 - 34714189
Alignment:
Q  25 gtgtcggtgtcgggacacgcctaatccgaggagtgtccgtg 65  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  34714228 gtgtcggtgtcgg-acacgcctaatccgaggagtgtccgtg 34714189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 17776678 - 17776712
Alignment:
Q  34 tcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| ||||||||||||||||||||||||||    
T  17776678 tcgggacaggcctaatccgaggagtgtccgtgctt 17776712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 23354619 - 23354589
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtg 65  Q
    |||||||||||||||||||||||||||||||    
T  23354619 cgggacacgcctaatccgaggagtgtccgtg 23354589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 11223831 - 11223798
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||| |||||||||||||||||    
T  11223831 cgggacacgcctaatctgaggagtgtccgtgctt 11223798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 18840991 - 18840958
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| |||||||||||||||||||||||||    
T  18840991 cgggacacacctaatccgaggagtgtccgtgctt 18840958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 19942346 - 19942379
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||| |||||    
T  19942346 cgggacacgcctaatccgaggagtgtccatgctt 19942379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 23058422 - 23058389
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||| |||||||||||||    
T  23058422 cgggacacgcctaatccgagaagtgtccgtgctt 23058389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 23354962 - 23354929
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||| |||||    
T  23354962 cgggacacgcctaatccgaggagtgtccttgctt 23354929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 38117137 - 38117104
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||| ||||||||||||    
T  38117137 cgggacacgcctaatccgaggggtgtccgtgctt 38117104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 3444863 - 3444831
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||| ||||||||||||||||||||||||||    
T  3444863 gggacatgcctaatccgaggagtgtccgtgctt 3444831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 42511359 - 42511327
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| ||||||||||||||||||||||||    
T  42511359 gggacacggctaatccgaggagtgtccgtgctt 42511327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 46722 - 46771
Alignment:
Q  17 aattacaagtgtcggtgtcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  46722 aattacaaatgtcggtgtcg--acacgcctaatccgaggagtgtccgtgctt 46771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 21257005 - 21256953
Alignment:
Q  17 aattacaagtgtcggtgtcg-ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||| ||| |||||| |||||||||||||||||||||||||    
T  21257005 aattacaagtgtcggtatcgtggacacacctaatccgaggagtgtccgtgctt 21256953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 20503546 - 20503579
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  20503546 cgggacacgcctaatccgaggagtgtccgtgctt 20503579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 34185090 - 34185057
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  34185090 cgggacacgcctaatccgaggagtgtccgtgctt 34185057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 4990948 - 4990917
Alignment:
Q  37 ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||    
T  4990948 ggacacgcctaatccgaggagtgtccgtgctt 4990917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 8789523 - 8789493
Alignment:
Q  38 gacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||    
T  8789523 gacacgcctaatccgaggagtgtccgtgctt 8789493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 8842413 - 8842443
Alignment:
Q  38 gacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||    
T  8842413 gacacgcctaatccgaggagtgtccgtgctt 8842443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 11610589 - 11610623
Alignment:
Q  34 tcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||| |||||||||||||||||    
T  11610589 tcgggacacgcctaatctgaggagtgtccgtgctt 11610623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 55401159 - 55401189
Alignment:
Q  38 gacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||    
T  55401159 gacacgcctaatccgaggagtgtccgtgctt 55401189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 4987258 - 4987229
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgt 64  Q
    ||||||||||||||||||||||||||||||    
T  4987258 cgggacacgcctaatccgaggagtgtccgt 4987229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 14979230 - 14979263
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||| |||||||||||||||||||    
T  14979230 cgggacacgcctaacccgaggagtgtccgtgctt 14979263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 27505332 - 27505365
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||| ||||||||||||||||||||||||||    
T  27505332 cgggacatgcctaatccgaggagtgtccgtgctt 27505365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 34910398 - 34910431
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||| ||||||||||||||||||||||||    
T  34910398 cgggacacgtctaatccgaggagtgtccgtgctt 34910431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 40052393 - 40052426
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||| |||||||    
T  40052393 cgggacacgcctaatccgaggagtgttcgtgctt 40052426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 40993313 - 40993280
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||| |||||    
T  40993313 cgggacacgcctaatccgaggagtgtccatgctt 40993280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 41961616 - 41961584
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||| |||||||||||||    
T  41961616 gggacacgcctaatccgagaagtgtccgtgctt 41961584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 27945081 - 27945132
Alignment:
Q  17 aattacaagtgtcggtgtcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||| | |||||||||  ||||||||||||||||||    
T  27945081 aattacaagtgtcggtgtcgtgtcacgcctaactcgaggagtgtccgtgctt 27945132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 5409809 - 5409776
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  5409809 cgggacacgcctaatccgaggagtgtccgtgctt 5409776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 29763165 - 29763134
Alignment:
Q  37 ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||    
T  29763165 ggacacgcctaatccgaggagtgtccgtgctt 29763134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 35862034 - 35862065
Alignment:
Q  37 ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||    
T  35862034 ggacacgcctaatccgaggagtgtccgtgctt 35862065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 28973920 - 28973886
Alignment:
Q  34 tcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||| ||||||||||||    
T  28973920 tcgggacacgcctaatccgaggtgtgtccgtgctt 28973886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 598289 - 598322
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||| |||||||||||||    
T  598289 cgggacacgcctaatccgagaagtgtccgtgctt 598322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 6490797 - 6490830
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||| |||||||||||||||||||||||    
T  6490797 cgggacacgcttaatccgaggagtgtccgtgctt 6490830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 8842317 - 8842284
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||| ||||||||||||||||    
T  8842317 cgggacacgcctaatccaaggagtgtccgtgctt 8842284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 9778586 - 9778619
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||| ||||||||||||||||    
T  9778586 cgggacacgcctaatccaaggagtgtccgtgctt 9778619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 24339734 - 24339767
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||| ||||||||    
T  24339734 cgggacacgcctaatccgaggagtgcccgtgctt 24339767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 29812636 - 29812603
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||| |||||||||||||    
T  29812636 cgggacacgcctaatccgagaagtgtccgtgctt 29812603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 30813882 - 30813911
Alignment:
Q  39 acacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||    
T  30813882 acacgcctaatccgaggagtgtccgtgctt 30813911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 32287441 - 32287408
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| |||||||||||||||||||||||||    
T  32287441 cgggacacacctaatccgaggagtgtccgtgctt 32287408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 40287340 - 40287307
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||| ||||||||||||||||||||||||||    
T  40287340 cgggacatgcctaatccgaggagtgtccgtgctt 40287307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 43027442 - 43027409
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||| ||||||||||||||    
T  43027442 cgggacacgcctaatccgatgagtgtccgtgctt 43027409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 3991395 - 3991427
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||| ||||    
T  3991395 gggacacgcctaatccgaggagtgtccgggctt 3991427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 32093991 - 32093959
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||| |||||||    
T  32093991 gggacacgcctaatccgaggagtgttcgtgctt 32093959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 47989588 - 47989622
Alignment:
Q  34 tcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||||    
T  47989588 tcgggacacgcctaatccgaggagtgtccgtgctt 47989622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 42359427 - 42359394
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  42359427 cgggacacgcctaatccgaggagtgtccgtgctt 42359394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 35702579 - 35702547
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||    
T  35702579 gggacacgcctaatccgaggagtgtccgtgctt 35702547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 37598913 - 37598945
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||    
T  37598913 gggacacgcctaatccgaggagtgtccgtgctt 37598945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 16297257 - 16297226
Alignment:
Q  37 ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||    
T  16297257 ggacacgcctaatccgaggagtgtccgtgctt 16297226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 22947813 - 22947844
Alignment:
Q  37 ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||    
T  22947813 ggacacgcctaatccgaggagtgtccgtgctt 22947844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 48450606 - 48450555
Alignment:
Q  17 aattacaagtgtcggtgtcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||   | ||||||| ||||||||||||||||||||||||    
T  48450606 aattacaagtgtcggacacaggacacgtctaatccgaggagtgtccgtgctt 48450555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 5898244 - 5898210
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgcttt 69  Q
    ||||||||| |||||||||||||||||||||||||    
T  5898244 cgggacacgtctaatccgaggagtgtccgtgcttt 5898210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 21366027 - 21365997
Alignment:
Q  38 gacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||    
T  21366027 gacacgcctaatccgaggagtgtccgtgctt 21365997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 22515862 - 22515832
Alignment:
Q  38 gacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||    
T  22515862 gacacgcctaatccgaggagtgtccgtgctt 22515832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 1486682 - 1486649
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||| ||||||    
T  1486682 cgggacacgcctaatccgaggagtgtctgtgctt 1486649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 9828136 - 9828169
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||| ||||||||||||||||||||||||    
T  9828136 cgggacacgtctaatccgaggagtgtccgtgctt 9828169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 16812637 - 16812670
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||| |||||||||||||||||    
T  16812637 cgggacacgcctaatctgaggagtgtccgtgctt 16812670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 22881605 - 22881572
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||| ||||||||||||||||||||||||    
T  22881605 cgggacacgtctaatccgaggagtgtccgtgctt 22881572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 26830668 - 26830701
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||| |||||||||||||||||    
T  26830668 cgggacacgcctaatcagaggagtgtccgtgctt 26830701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 27965978 - 27965945
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||| |||||    
T  27965978 cgggacacgcctaatccgaggagtgtccatgctt 27965945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 34741927 - 34741960
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||| ||||||||||||||    
T  34741927 cgggacacgcctaatccgaagagtgtccgtgctt 34741960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 40917841 - 40917874
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||| |||||||||||    
T  40917841 cgggacacgcctaatccgaggactgtccgtgctt 40917874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 15765840 - 15765872
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||| ||||||||||||||    
T  15765840 gggacacgcctaatccgaagagtgtccgtgctt 15765872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 18556422 - 18556390
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||| |||||||||||||    
T  18556422 gggacacgcctaatccgagaagtgtccgtgctt 18556390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 36878548 - 36878580
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||| ||||||||||||||||    
T  36878548 gggacacgcctaatcccaggagtgtccgtgctt 36878580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 31109495 - 31109462
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgcttt 69  Q
    ||||||||||||||||||||||||||||||||||    
T  31109495 gggacacgcctaatccgaggagtgtccgtgcttt 31109462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 31514938 - 31514968
Alignment:
Q  38 gacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||    
T  31514938 gacacgcctaatccgaggagtgtccgtgctt 31514968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 15816096 - 15816063
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||| |||||||||||||    
T  15816096 cgggacacgcctaatccgagaagtgtccgtgctt 15816063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 16987994 - 16988027
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| |||||||||||||||||||||||||    
T  16987994 cgggacacccctaatccgaggagtgtccgtgctt 16988027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 17751737 - 17751770
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||| ||||    
T  17751737 cgggacacgcctaatccgaggagtgtccgcgctt 17751770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 17760724 - 17760757
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||| ||||    
T  17760724 cgggacacgcctaatccgaggagtgtccgcgctt 17760757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 22652068 - 22652101
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||| ||||||||||||||||||||||||    
T  22652068 cgggacacgtctaatccgaggagtgtccgtgctt 22652101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 25566911 - 25566944
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||| ||||||    
T  25566911 cgggacacgcctaatccgaggagtgtctgtgctt 25566944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 29510271 - 29510238
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| |||||||||||||||||||||||||    
T  29510271 cgggacacacctaatccgaggagtgtccgtgctt 29510238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 39820509 - 39820542
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||| |||||||||||||    
T  39820509 cgggacacgcctaatccgagaagtgtccgtgctt 39820542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 5775342 - 5775309
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  5775342 cgggacacgcctaatccgaggagtgtccgtgctt 5775309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 23292964 - 23292931
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  23292964 cgggacacgcctaatccgaggagtgtccgtgctt 23292931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 28470442 - 28470479
Alignment:
Q  31 gtgtcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  28470442 gtgtcgggacatgcctaatccgaggagtgtccgtgctt 28470479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 715582 - 715550
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||    
T  715582 gggacacgcctaatccgaggagtgtccgtgctt 715550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 752908 - 752876
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||    
T  752908 gggacacgcctaatccgaggagtgtccgtgctt 752876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 28084606 - 28084638
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||    
T  28084606 gggacacgcctaatccgaggagtgtccgtgctt 28084638  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 30298987 - 30299043
Alignment:
Q  17 aattacaagtgtcggtgtcg-----ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||     ||||||| ||||||||||||||||||||||||    
T  30298987 aattacaagtgtcggtgtcgtgccgggacacgtctaatccgaggagtgtccgtgctt 30299043  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 30327855 - 30327911
Alignment:
Q  17 aattacaagtgtcggtgtcg-----ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||     ||||||| ||||||||||||||||||||||||    
T  30327855 aattacaagtgtcggtgtcgtgccgggacacgtctaatccgaggagtgtccgtgctt 30327911  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 4383449 - 4383480
Alignment:
Q  37 ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||    
T  4383449 ggacacgcctaatccgaggagtgtccgtgctt 4383480  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 22440593 - 22440562
Alignment:
Q  37 ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||    
T  22440593 ggacacgcctaatccgaggagtgtccgtgctt 22440562  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 3064903 - 3064873
Alignment:
Q  38 gacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||    
T  3064903 gacacgcctaatccgaggagtgtccgtgctt 3064873  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 11596336 - 11596302
Alignment:
Q  34 tcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||| |||||||||||||||||    
T  11596336 tcgggacacgcctaatctgaggagtgtccgtgctt 11596302  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 12895253 - 12895219
Alignment:
Q  34 tcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||| |||||||    
T  12895253 tcgggacacgcctaatccgaggagtgttcgtgctt 12895219  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 36635411 - 36635444
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||| ||||||||||||||    
T  36635411 cgggacacgcctaatccgaagagtgtccgtgctt 36635444  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 40784034 - 40784067
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| |||||||||||||||||||||||||    
T  40784034 cgggacacacctaatccgaggagtgtccgtgctt 40784067  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 53381568 - 53381535
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| |||||||||||||||||||||||||    
T  53381568 cgggacacacctaatccgaggagtgtccgtgctt 53381535  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 18844467 - 18844428
Alignment:
Q  28 tcggtgtcgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||| |||||||||||||||| |||||||||||||    
T  18844467 tcggtgtcgg-acacgcctaatccgagaagtgtccgtgctt 18844428  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 28964225 - 28964193
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||| |||||    
T  28964225 gggacacgcctaatccgaggagtgtccatgctt 28964193  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 29205550 - 29205582
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||| |||||||    
T  29205550 gggacacgcctaatccgaggagtgttcgtgctt 29205582  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 30094094 - 30094126
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgct 67  Q
    ||||||||||||||||||| |||||||||||||    
T  30094094 cgggacacgcctaatccgaagagtgtccgtgct 30094126  T

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Target: scaffold0793 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 4858 - 4826
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||    
T  4858 gggacacgcctaatccgaggagtgtccgtgctt 4826  T

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Target: scaffold0475 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 3390 - 3422
Alignment:
Q  36 gggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||||||||||||||||    
T  3390 gggacacgcctaatccgaggagtgtccgtgctt 3422  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 92905 - 92936
Alignment:
Q  37 ggacacgcctaatccgaggagtgtccgtgctt 68  Q
    ||||||||||||||||||||||||||||||||    
T  92905 ggacacgcctaatccgaggagtgtccgtgctt 92936  T

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Target: scaffold0652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 440 - 407
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||| |||||||||||||||||||||||||    
T  440 cgggacacacctaatccgaggagtgtccgtgctt 407  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 188483 - 188512
Alignment:
Q  37 ggacacgcctaatccgaggagtgtccgtgc 66  Q
    ||||||||||||||||||||||||||||||    
T  188483 ggacacgcctaatccgaggagtgtccgtgc 188512  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 241686 - 241719
Alignment:
Q  35 cgggacacgcctaatccgaggagtgtccgtgctt 68  Q
    |||||||||||||||||||| |||||||||||||    
T  241686 cgggacacgcctaatccgagaagtgtccgtgctt 241719  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 3024 - 3052
Alignment:
Q  39 acacgcctaatccgaggagtgtccgtgct 67  Q
    |||||||||||||||||||||||||||||    
T  3024 acacgcctaatccgaggagtgtccgtgct 3052  T

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