View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_17 (Length: 356)
Name: NF19793_low_17
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 248568 - 248900
Alignment:
| Q |
8 |
ccaagaaaatctcacattacttgaaaaccgaggttacgaacttacgagtaatttataaacacgcactcaattgaacaacgacttttaactaagccgcatt |
107 |
Q |
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| T |
248568 |
ccaaaaaaatctcacattacttgaaaaccgaggttacgaacttacgagtaatttataaacacgcactcaattgaacaacgacttttaactaagccgcatt |
248667 |
T |
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| Q |
108 |
tgtgaagtgaagtttctataatatctaaagtggacaatacctcggaagaaattaaaatccaaatgaattaatttgagcataaggtagtattgatcatatt |
207 |
Q |
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| T |
248668 |
tgtgaagtgaagtttctataatatctaaagtggacaatacctcagaagaaattaaaatccaaatgaattaatttgagcataaggtagtattgatcatatt |
248767 |
T |
|
| Q |
208 |
ttgaggtggcttgtaactaagagctcccaagctgtatacacataggttattctcttgttttaatatctgactacttcctgtgctcttcaagaaaggaaca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
248768 |
ttgaggtggcttgtaactaagagctcccaagctgtatacacataggttattctcttgttttaatatctgactacttcctgtgctcttcaagaaaggaaca |
248867 |
T |
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| Q |
308 |
ttgcaagaataagaagatgatgaagttcctatc |
340 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
248868 |
ttgcaagaataagaagatgatgaagttcctatc |
248900 |
T |
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