View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_18 (Length: 324)
Name: NF19793_low_18
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 35742509 - 35742816
Alignment:
| Q |
1 |
aatatggaagtcgaattcaatgttgtgactcttaaacttcttagactcatcatctttggttcgttccaaagcatctaaatcggttttaatctgcatgcgt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742509 |
aatatggaagttgaattcaatgttgtgactcttaaacttcttagactcatcatctttggttcgttccaaagcatctaaatcggttttaatctgcatgcgt |
35742608 |
T |
|
| Q |
101 |
tggtgcacttcggtggttagaatgttagaaataattgactgcattaggacacaaatataagtacatataaatgatgatgttggattaccttgctgaaata |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742609 |
tgttgcacttcggtggttagaatgttagaaataattgactgcattaggacacaaatataagtacatataaatgatgatgttggattaccttgctgaaata |
35742708 |
T |
|
| Q |
201 |
acgttcaaccttgtccagaagctgacccataggagccactaccttccaattttgaagttcagtgaggattgaatcaagcttattgtacaatgatgccgcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35742709 |
acgttcaaccttgtccagaagctgacccataggagccactaccttccaattttgaagttcagtgaggattgaatcaagcttattgtacaatgatgctgcc |
35742808 |
T |
|
| Q |
301 |
attctaat |
308 |
Q |
| |
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|||||||| |
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| T |
35742809 |
attctaat |
35742816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 3424618 - 3424532
Alignment:
| Q |
7 |
gaagtcgaattcaatgttgtgactcttaaacttcttagactcatcatctttggttcgttccaaagcatctaaatcggttttaatctg |
93 |
Q |
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|||||||||||| ||||| || | |||||| ||||| | || |||||||| ||||| |||||||||||||| || ||||| ||||| |
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| T |
3424618 |
gaagtcgaattcgatgttatggcccttaaatttcttcaattcttcatctttcgttcgctccaaagcatctaattctgttttgatctg |
3424532 |
T |
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