View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19793_low_19 (Length: 314)
Name: NF19793_low_19
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_19 |
 | |
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| [»] scaffold0627 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
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| [»] chr5 (16 HSPs) |
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Alignment Details
Target: scaffold0627 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 5449 - 5750
Alignment:
| Q |
13 |
atactttatcctaagtgattcgacatcaccacgaaggggaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcagga |
112 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
5449 |
atacttcatcctaagtgatttgacatcaccacgaagagtaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaactttttagga |
5548 |
T |
|
| Q |
113 |
tcgcattcaagaaggtatagggttcttgacactcgtctatagtatcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5549 |
tcgcattcaagaaggtatagggttcttgacactcgtctatagtatcttgttcgaatcatgagactaatcggtgatcgctcaaagtgtaatttagcaaaat |
5648 |
T |
|
| Q |
213 |
gtggttctgaaatcattgctttccaaattttgcacacacatttacatatgagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtggga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
5649 |
gtggttctgaaatcattgctttccaaattttgcacacacatttacaaatgagaagagacttgatgggaagttgaagaaaaatgtgagtggtgaggtggga |
5748 |
T |
|
| Q |
313 |
tg |
314 |
Q |
| |
|
|| |
|
|
| T |
5749 |
tg |
5750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 16717169 - 16717463
Alignment:
| Q |
20 |
atcctaagtgattcgacatcaccacgaaggggaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcatt |
119 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
16717169 |
atcccaagtgatttgacatcaccgcgaagaggaagtctgaatataggctcaagattcacatgattgttgcttccaatctcaaacttttctggatcgcact |
16717268 |
T |
|
| Q |
120 |
caagaaggtatagggttcttgacactcgtctatagtatcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttc |
219 |
Q |
| |
|
| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||| |
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|
| T |
16717269 |
ctagaaggtagagggttcttgacactcgtttatagtatcttgttcgaatcatgagactaattggtgattgctcaaagtgtaatttagcaaaatgcgattc |
16717368 |
T |
|
| Q |
220 |
tgaaatcattgctttccaaattttgcacacacatttacatatgagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatg |
314 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
16717369 |
tgaaatcattcttttccaaattttgcacacacatttacaaatgagaagagacttgatgggaagttgaagcaaaatgtgggcggtgaggtgggatg |
16717463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 43 - 314
Target Start/End: Original strand, 8637749 - 8638020
Alignment:
| Q |
43 |
acgaaggggaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattcaagaaggtatagggttcttgac |
142 |
Q |
| |
|
|||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| | |||||||||| |
|
|
| T |
8637749 |
acgaagaggaagcttaaatataggcgcaagcttcacatgattgttgcttccaatctcaaacttttcatgatcacactcaagaaggtacatggttcttgac |
8637848 |
T |
|
| Q |
143 |
actcgtctatagtatcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattt |
242 |
Q |
| |
|
||| ||||| | |||| |||||||||||||||| ||| | ||||||||| || |||||||||||||||||||| |||||||||| ||||||||| | |
|
|
| T |
8637849 |
actagtctaccatcatttgtccgaatcatgagactaaggggcgctcgctcaaattgcaatttagcaaaatgtggttccgaaatcattgttttccaaatct |
8637948 |
T |
|
| Q |
243 |
tgcacacacatttacatatgagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatg |
314 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || | ||||||||| | ||| |||||||||| |||||||| |
|
|
| T |
8637949 |
tgcacacacatttacaaatgagaagagacttaatggaaagttgaagcagaatttgggtggtgatgtgggatg |
8638020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 58 - 300
Target Start/End: Complemental strand, 2873763 - 2873521
Alignment:
| Q |
58 |
gaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattcaagaaggtatagggttcttgacactcgtctatagtat |
157 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| | ||| || | |
|
|
| T |
2873763 |
gaatatagggtcaagcttcacatgattgttgcttccaatctcaaacttttcagcttcgcactcaagaaggtataggtttcttgacactcctatattgtct |
2873664 |
T |
|
| Q |
158 |
cttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttac |
257 |
Q |
| |
|
||||||||| || ||||| |||| ||||||||| || |||||||||||||||||||||||||| | || |||||| |||||||||||||| ||| |
|
|
| T |
2873663 |
aaatttcgaatcacgaaactaactggtgctcgctcaaattgcaatttagcaaaatgtggttctgaaataagtgtattccaagttttgcacacacatctac |
2873564 |
T |
|
| Q |
258 |
atatgagaagagacttgataggaagttgaagaaaaatgtgggt |
300 |
Q |
| |
|
| |||||||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
2873563 |
acatgagaagagacttaatgggaagttgaagaagaatgtgggt |
2873521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 50 - 309
Target Start/End: Original strand, 8529808 - 8530061
Alignment:
| Q |
50 |
ggaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattcaagaaggtatagggttcttgacactcgtc |
149 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
8529808 |
ggaagcttgaatataggtgcaagcttgacatgattgttgcttccaatctcaaacttatcaggctcgcactcaagaaggtacagggttcttgacactcg-- |
8529905 |
T |
|
| Q |
150 |
tatagtatcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacac |
249 |
Q |
| |
|
|| || |||||||||||||||||||| ||||||||||||||||| |||||||||| |||| ||||||||| |||| |||||||| ||||||||| |
|
|
| T |
8529906 |
----gtgtcgcgttcgaatcatgagactaattggtgatcgctcaaagtgcgatttagcaaattgtgattctgaaataattgttttccaaactttgcacac |
8530001 |
T |
|
| Q |
250 |
acatttacatatgagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtg |
309 |
Q |
| |
|
||||||||| ||||||| |||||| | |||||| |||| | |||||||| |||||||| |
|
|
| T |
8530002 |
acatttacaaatgagaacagacttaaatggaagtcgaaggagaatgtgggcagtgaggtg |
8530061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 50 - 288
Target Start/End: Complemental strand, 1599535 - 1599297
Alignment:
| Q |
50 |
ggaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattcaagaaggtatagggttcttgacactcgtc |
149 |
Q |
| |
|
|||||| |||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||| || || ||||||||||| | ||||||||| ||||| |
|
|
| T |
1599535 |
ggaagcttgaacataggcgcaagcttcacacgatcgttgcttccaatctcaaacttttcaggttcacactcaagaaggtacaaggttcttgatactcggt |
1599436 |
T |
|
| Q |
150 |
tatagtatcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacac |
249 |
Q |
| |
|
||||| | || |||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
1599435 |
aatagtcattggtccgaatcatgagactaagtggtgatcgctcaaagtgcgatttagcaaaatgtgattctgaaatcaatgttttccaaattttgcacac |
1599336 |
T |
|
| Q |
250 |
acatttacatatgagaagagacttgataggaagttgaag |
288 |
Q |
| |
|
| ||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
1599335 |
agatttacaaatgagaagcgacttaataggaagttgaag |
1599297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 314
Target Start/End: Complemental strand, 8547400 - 8547108
Alignment:
| Q |
22 |
cctaagtgattcgacatcaccacgaaggggaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattca |
121 |
Q |
| |
|
||||| ||||| || || ||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || || ||| |
|
|
| T |
8547400 |
cctaaatgatttgatataaccacgaagaggaagcttgaatataggatcaagcttcacatgattgttgcttccaatcttgaacttttcaggctcacactca |
8547301 |
T |
|
| Q |
122 |
agaaggtatagggttcttgacactcgtctatagt-atcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttct |
220 |
Q |
| |
|
||| |||| | ||||||||||||| |||||| || |||| || | |||||| |||| || |||||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
8547300 |
agatggtacatggttcttgacactagtctatcgtcatct-gtccaaatcattagacaaacttgtgatctctcaaagtgcaatttagcaaaatgttgttct |
8547202 |
T |
|
| Q |
221 |
gaaatcattgctttccaaattttgcacacacatttacatatgagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatg |
314 |
Q |
| |
|
||||| |||| ||||||||| ||||| ||||||||||| ||||||||||||||||| |||||| ||| | |||||||| |||||||| |||| |
|
|
| T |
8547201 |
gaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgtgaagtttaagcagaatgtgggcagtgaggtgagatg |
8547108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 58 - 282
Target Start/End: Complemental strand, 2844317 - 2844093
Alignment:
| Q |
58 |
gaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattcaagaaggtatagggttcttgacactcgtctatagtat |
157 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || || ||||||||||||||| |||||||||||| | ||| || | |
|
|
| T |
2844317 |
gaatatagggtcaagcttcacatgatttttgcttccaatctcaaacttttcagcttcacactcaagaaggtataggtttcttgacactcctatattgtct |
2844218 |
T |
|
| Q |
158 |
cttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttac |
257 |
Q |
| |
|
||||||||| || ||||| |||| ||||||||| || ||||||||||||||||||||||| || | || ||||||||||||||||||||| ||| |
|
|
| T |
2844217 |
aaatttcgaatcacgaaactaactggtgctcgctcaaattgcaatttagcaaaatgtggttctgatataagtgtattccaaattttgcacacacatctac |
2844118 |
T |
|
| Q |
258 |
atatgagaagagacttgataggaag |
282 |
Q |
| |
|
|||||||||||||||| || ||||| |
|
|
| T |
2844117 |
atatgagaagagacttaatgggaag |
2844093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 58 - 282
Target Start/End: Complemental strand, 2856150 - 2855926
Alignment:
| Q |
58 |
gaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattcaagaaggtatagggttcttgacactcgtctatagtat |
157 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || || ||||||||||||||| |||||||||||| | ||| || | |
|
|
| T |
2856150 |
gaatatagggtcaagcttcacatgatttttgcttccaatctcaaacttttcagcttcacactcaagaaggtataggtttcttgacactcctatattgtct |
2856051 |
T |
|
| Q |
158 |
cttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttac |
257 |
Q |
| |
|
||||||||| || ||||| |||| ||||||||| || ||||||||||||||||||||||| || | || ||||||||||||||||||||| ||| |
|
|
| T |
2856050 |
aaatttcgaatcacgaaactaactggtgctcgctcaaattgcaatttagcaaaatgtggttctgatataagtgtattccaaattttgcacacacatctac |
2855951 |
T |
|
| Q |
258 |
atatgagaagagacttgataggaag |
282 |
Q |
| |
|
|||||||||||||||| || ||||| |
|
|
| T |
2855950 |
atatgagaagagacttaatgggaag |
2855926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 50 - 297
Target Start/End: Original strand, 8536372 - 8536619
Alignment:
| Q |
50 |
ggaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattcaagaaggtatagggttcttgacactcgtc |
149 |
Q |
| |
|
|||||| |||| |||||| |||| |||||||||| ||||||||||||||||||||||| |||||| | ||||||||||| | |||||||| ||||| | |
|
|
| T |
8536372 |
ggaagcttgaacataggcacaagtttcacatgatcgttgcttccaatctcaaacttttgaggatcagactcaagaaggtacattgttcttgaaactcggc |
8536471 |
T |
|
| Q |
150 |
tatagtatcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacac |
249 |
Q |
| |
|
|||||| | || |||||||||||||| | |||||| |||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
8536472 |
tatagtcattggtccgaatcatgagactgagtggtgattgctcaaagtgggatttagcaaaatgtgattctgaaatcaatgttttccaaattttgcacac |
8536571 |
T |
|
| Q |
250 |
acatttacatatgagaagagacttgataggaagttgaagaaaaatgtg |
297 |
Q |
| |
|
| ||||||| |||||||| ||||| | ||||||||||| | |||||| |
|
|
| T |
8536572 |
agatttacaaatgagaagcgacttaaatggaagttgaagcagaatgtg |
8536619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 50 - 288
Target Start/End: Complemental strand, 9073967 - 9073729
Alignment:
| Q |
50 |
ggaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattcaagaaggtatagggttcttgacactcgtc |
149 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || || ||||||||||| | |||||| ||||||| |
|
|
| T |
9073967 |
ggaagcttgaatataggctcaagcttgacatgtttgttgcttccaatctcaaacttttcaggttcacactcaagaaggtacatggttctcgacactctaa |
9073868 |
T |
|
| Q |
150 |
tatagtatcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacac |
249 |
Q |
| |
|
||| || || |||||||| | ||||| |||| ||||||||| || |||||||||||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
9073867 |
tatcgtcaagggtccgaatcataaaactaagtggtgctcgctcaaattgcaatttagcaaaatgtggttctgaaataagtcttttccaaattttgcacac |
9073768 |
T |
|
| Q |
250 |
acatttacatatgagaagagacttgataggaagttgaag |
288 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||| |||| |
|
|
| T |
9073767 |
acatttacaaatgagaagaggcttgacgggaagtcgaag |
9073729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 43 - 299
Target Start/End: Original strand, 8645094 - 8645350
Alignment:
| Q |
43 |
acgaaggggaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattcaagaaggtatagggttcttgac |
142 |
Q |
| |
|
|||||| |||||| | |||||||| ||||||| ||| || ||||||||||||| | ||||||||||||||| || ||||||||||| | ||||||||| |
|
|
| T |
8645094 |
acgaagaggaagcttaaatataggtgcaagcttgacacgactgttgcttccaatttgaaacttttcaggatcacactcaagaaggtacatagttcttgac |
8645193 |
T |
|
| Q |
143 |
actcgtctatagt-atcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaatt |
241 |
Q |
| |
|
||| ||||| ||| |||| | ||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
8645194 |
actagtctacagtcatcta-tccgaatcatgagacaaacttgtgatcgctcaaagttcaatttagcaaaatgtggttctgaaataagtgttttccaaatc |
8645292 |
T |
|
| Q |
242 |
ttgcacacacatttacatatgagaagagacttgataggaagttgaagaaaaatgtggg |
299 |
Q |
| |
|
||||||||||||| ||| ||||||||||| || || ||||| ||||| || ||||||| |
|
|
| T |
8645293 |
ttgcacacacattcacaaatgagaagagatttaatgggaagatgaagcaacatgtggg |
8645350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 58 - 282
Target Start/End: Complemental strand, 2904269 - 2904045
Alignment:
| Q |
58 |
gaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattcaagaaggtatagggttcttgacactcgtctatagtat |
157 |
Q |
| |
|
||||||||||| |||||||||| |||||||| |||||| ||| |||| |||||| ||||| ||||||||||||||| ||||||||||| |||||| ||| |
|
|
| T |
2904269 |
gaatataggcttaagcttcacaagattgttggttccaaactcgaactattcaggttcgcactcaagaaggtataggtttcttgacact--tctatattat |
2904172 |
T |
|
| Q |
158 |
ct--tgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacattt |
255 |
Q |
| |
|
|| | ||| |||||||| ||| || |||| ||||||||| || |||||||| || | ||||||||||| | || ||||||||||||||||||||| | |
|
|
| T |
2904171 |
ctaattttctaatcatgaaactgattggtgctcgctcaaattgcaatttagcgaatttaggttctgaaataagtgtattccaaattttgcacacacatct |
2904072 |
T |
|
| Q |
256 |
acatatgagaagagacttgataggaag |
282 |
Q |
| |
|
|||||||||||||||||| || ||||| |
|
|
| T |
2904071 |
acatatgagaagagacttaatgggaag |
2904045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 164 - 314
Target Start/End: Original strand, 9004356 - 9004506
Alignment:
| Q |
164 |
cgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatga |
263 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| || ||||||||||||||||||| |||||| |||| ||||||||| |||||||||||| |||| || | |
|
|
| T |
9004356 |
cgaatcatgagactaattggtgctcgctcaaattgcaatttagcaaaatgtggttatgaaataattgttttccaaatcttgcacacacatctacaaataa |
9004455 |
T |
|
| Q |
264 |
gaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatg |
314 |
Q |
| |
|
|||||||||| || ||||| ||||| | ||||||| | |||||||| |||| |
|
|
| T |
9004456 |
gaagagacttaatgggaagatgaagcagaatgtggttagtgaggtgagatg |
9004506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 8678723 - 8678858
Alignment:
| Q |
164 |
cgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatga |
263 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| | || ||||||||| ||||||||||||||||| |||| |
|
|
| T |
8678723 |
cgaatcatgagacaaacttgtgatcgctcaaagttcaatttagcaaaatgtggttctgaaataagtgttttccaaatcttgcacacacatttacaaatga |
8678822 |
T |
|
| Q |
264 |
gaagagacttgataggaagttgaagaaaaatgtggg |
299 |
Q |
| |
|
||||||| || || ||||| ||||| |||||||||| |
|
|
| T |
8678823 |
gaagagatttaatgggaagatgaagcaaaatgtggg |
8678858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 31807273 - 31807153
Alignment:
| Q |
182 |
ggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatgagaagagacttgataggaa |
281 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||| || ||||||| || ||||| || | || |||||||||||||||| || ||||||||| |||| |
|
|
| T |
31807273 |
ggtgatcgctcaaagtgcactttggcaaaatgtgggtcagaaatcactgtgttccatgttctacaaacacatttacatatgataacagacttgatgggaa |
31807174 |
T |
|
| Q |
282 |
gttgaagaaaaatgtgggtgg |
302 |
Q |
| |
|
|| |||| | ||||| ||||| |
|
|
| T |
31807173 |
gtcgaagtagaatgtcggtgg |
31807153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 11353671 - 11353619
Alignment:
| Q |
206 |
gcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttaca |
258 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||| ||||||| ||||||||||| |
|
|
| T |
11353671 |
gcaaaatatggttctgaaatcagtgcattccatgttttgcaaacacatttaca |
11353619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 11373722 - 11373774
Alignment:
| Q |
206 |
gcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttaca |
258 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||| ||||||| ||||||||||| |
|
|
| T |
11373722 |
gcaaaatatggttctgaaatcagtgcattccatgttttgcaaacacatttaca |
11373774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 50 - 309
Target Start/End: Original strand, 9443969 - 9444222
Alignment:
| Q |
50 |
ggaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattcaagaaggtatagggttcttgacactcgtc |
149 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9443969 |
ggaagcttgaatataggtgcaagcttgacatgattgttgcttccaatctcaaacttatcaggctcgcactcaagaaggtatagggttcttgacactcg-- |
9444066 |
T |
|
| Q |
150 |
tatagtatcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacac |
249 |
Q |
| |
|
|| || ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||| |||||||| ||||||||| |
|
|
| T |
9444067 |
----gtgtcgtgttcgaatcatgagactaattggtgatcgctcaaagtgcaatttagcaaattgtgattctgaaatcattgttttccaaactttgcacac |
9444162 |
T |
|
| Q |
250 |
acatttacatatgagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtg |
309 |
Q |
| |
|
| ||||||| ||||||| |||||| | |||||| |||| | |||||||| |||||||| |
|
|
| T |
9444163 |
agatttacaaatgagaacagacttaaatggaagtcgaaggagaatgtgggcagtgaggtg |
9444222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 50 - 309
Target Start/End: Complemental strand, 48361087 - 48360829
Alignment:
| Q |
50 |
ggaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattcaagaaggtatagggttcttgacactcgtc |
149 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| | |||||||||||||| || |
|
|
| T |
48361087 |
ggaagcttgaatataggtgtaagcttcacatggttgttgcttccaatctcaaacttttcaggatcacactcaagaaggtacatggttcttgacactcctc |
48360988 |
T |
|
| Q |
150 |
tatagtatcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacac |
249 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||||||||| |||||||||| |||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
48360987 |
tatagtcagg-gtccgaatcatgagactaagtggtgatcgctcaaagtgcgatttagcaaattgtgattctgaaatcagtgttttccaaattttgcacac |
48360889 |
T |
|
| Q |
250 |
acatttacatatgagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtg |
309 |
Q |
| |
|
| ||||||| || ||||||||||| || ||||||||||| | |||||||| |||||||| |
|
|
| T |
48360888 |
agatttacaaataagaagagacttaatgggaagttgaaggagaatgtgggcagtgaggtg |
48360829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 43 - 314
Target Start/End: Original strand, 35780705 - 35780976
Alignment:
| Q |
43 |
acgaaggggaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaacttttcaggatcgcattcaagaaggtatagggttcttgac |
142 |
Q |
| |
|
|||||| |||||| | ||||| || |||||||||||| ||||||| ||||||| ||||||||||||||| || || |||||||||| |||||||||||| |
|
|
| T |
35780705 |
acgaagaggaagcttaaatatggggtcaagcttcacaagattgttccttccaaactcaaacttttcaggctcacactcaagaaggtgcagggttcttgac |
35780804 |
T |
|
| Q |
143 |
actcg-tctatagtatcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaatt |
241 |
Q |
| |
|
|| | |||| || | || |||| |||||||||| | |||||| |||||||||| ||||||||||| || |||||||||||||||| ||| || ||| |
|
|
| T |
35780805 |
acatgatcta-agcgacgggtccgaaccatgagactagttggtgatagctcaaagtgcaatttagcaaattgcggttctgaaatcattgtttttcagatt |
35780903 |
T |
|
| Q |
242 |
ttgcacacacatttacatatgagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatg |
314 |
Q |
| |
|
||||||||||| |||| ||||||||||| || || ||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
35780904 |
atgcacacacatctacaaatgagaagagattttatgggaagttgaagcaaaatgtgggcggtgaggtgggatg |
35780976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 25290765 - 25290659
Alignment:
| Q |
182 |
ggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatgagaagagacttgataggaa |
281 |
Q |
| |
|
||||| ||||||||||| | ||| ||||||||||| |||||||||| || ||||| || | || ||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
25290765 |
ggtgaccgctcaaagtgcactttggcaaaatgtggatctgaaatcactgtgttccatgttctacaaacacatttacatacgagaacagacttgatgggaa |
25290666 |
T |
|
| Q |
282 |
gttgaag |
288 |
Q |
| |
|
|| |||| |
|
|
| T |
25290665 |
gtcgaag |
25290659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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