View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_23 (Length: 288)
Name: NF19793_low_23
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 47695128 - 47694868
Alignment:
| Q |
20 |
gtccaggcgttttattaaacacatcatcagcgacagccactaacctggcttcgatatttacttgtttctgttgtcatcacatcaaaaatggattcaatgg |
119 |
Q |
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| T |
47695128 |
gtccacgcgttttattaaacacatcatcagcgacaaccactaacctggcttcgatatttacttgtttatgttgtcatcacatcaaaaatggattcaatgg |
47695029 |
T |
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| Q |
120 |
aatagcgtaagatgcattagtcgtaataactgattgctcctttttgtattccacatcgttcaagagaagtgttgtcgatgcttttaggaaaccacggcaa |
219 |
Q |
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| T |
47695028 |
aatagcgtaagatgaactagtcgtagtaactgattgctcctttttgtattccacatcattcaagagaagtgttgtggatgcttttaggaaaccacggcaa |
47694929 |
T |
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| Q |
220 |
tcctctggttcaatatctcctctacaaattccaattgcgtttactttgccaggttcatctc |
280 |
Q |
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| T |
47694928 |
tcctctggttcaatatctcctctacaaattccaattgcgtttactttgccaggttcttctc |
47694868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 280
Target Start/End: Complemental strand, 47692525 - 47692409
Alignment:
| Q |
165 |
gtattccacatcgttca-agagaagtgttgtcgatgcttttaggaaaccacggcaatcctctggttcaatatctcctctacaaattccaattgcgtttac |
263 |
Q |
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| T |
47692525 |
gtattccacatcgttccgagagaagtgttgtgaatgcttccaggcaaccacgacagtcctctggttcaatgtctcctctacagattccaattgcatttac |
47692426 |
T |
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| Q |
264 |
tttgccaggttcatctc |
280 |
Q |
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| T |
47692425 |
cttgtcagcttcttctc |
47692409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 275
Target Start/End: Complemental strand, 47673907 - 47673783
Alignment:
| Q |
152 |
attgctcctttttgtattccacatcgttcaa-gagaagtgttgtcgatgcttttaggaaaccacggcaatcctctggttcaatatctcctctacaaattc |
250 |
Q |
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| T |
47673907 |
attgcttctttttgtattccacatcgatccacgagaagtgtagccgatgatttcaaacaaccgcgacattcctctggattaatgtctcctctacaaaaac |
47673808 |
T |
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| Q |
251 |
caattgcgtttactttgccaggttc |
275 |
Q |
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| T |
47673807 |
caattgcatttactttgtcaggttc |
47673783 |
T |
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