View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_24 (Length: 285)
Name: NF19793_low_24
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 97 - 283
Target Start/End: Original strand, 10350744 - 10350915
Alignment:
| Q |
97 |
atctcaccaatgaattatcaacaaaaataacgtagagagcttatcatatttatttcatccttttcacttcaaaatataatcgtaccagaaactttataat |
196 |
Q |
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| T |
10350744 |
atctcaccaatgaattatcaacaaaaataacgtagagagcttatcatatttatttcatccttttcacttcaaaatataatcgtac--------------- |
10350828 |
T |
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| Q |
197 |
catttaaaagattttgttaagcgagcaaaattgttctagtttacaatgcagggaaaatattttgattccaatggattctttctatgt |
283 |
Q |
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| T |
10350829 |
catttaaaagattttgtcaagcgagcaaaattgttctagtttacaatgcagggaaaatattttgtttccaatggattctttctatgt |
10350915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 284
Target Start/End: Original strand, 10355255 - 10355366
Alignment:
| Q |
160 |
tcacttcaaaatataatcgtaccagaaactttataatcatttaaaagattttgttaagcgagcaaaattgttctagtttacaatgcagggaaaatatttt |
259 |
Q |
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| T |
10355255 |
tcacttcaaaaaataatcgtgccagaaactttataaccatttaaaagat-------------caaaatagttctagtttacagtgcagggaaaatatttt |
10355341 |
T |
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| Q |
260 |
gattccaatggattctttctatgtt |
284 |
Q |
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| T |
10355342 |
gattccaatggattctttctatgtt |
10355366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 10350688 - 10350745
Alignment:
| Q |
18 |
taatagggctaatcctcatgtaatttaagagaaaaattaaagaaagttttatgtcaat |
75 |
Q |
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| T |
10350688 |
taatagggctaatcctcatgtaatttaagagaaaaattaaagaaagttttgtgtcaat |
10350745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 10355190 - 10355258
Alignment:
| Q |
35 |
atgtaatttaagagaaaaattaaagaaagttttatgtcaatattgtatttcactaaatcaagatctcac |
103 |
Q |
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| T |
10355190 |
atgtagtttaagagaaaaataaaagaaaattttgtggcaatattatatttcactaaatcaagacctcac |
10355258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 10362001 - 10362042
Alignment:
| Q |
69 |
tgtcaatattgtatttcactaaatcaagatctcaccaatgaa |
110 |
Q |
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| T |
10362001 |
tgtcaatattgtatttcactaaatcaagacgtaaccaatgaa |
10362042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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