View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_27 (Length: 274)
Name: NF19793_low_27
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 36957537 - 36957632
Alignment:
| Q |
16 |
atcacttcattagcaatctcaccttttaacacaatgttaattctcatgttctataacatctatattgctgaattcctcaaaatgaatccaacatga |
111 |
Q |
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| T |
36957537 |
atcacttcattagcaatctcaccttttaacacaaagttaattctcatgttctataacacctatattgctgaattcctcaaaatgaatccaacatga |
36957632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 107 - 258
Target Start/End: Original strand, 36957701 - 36957838
Alignment:
| Q |
107 |
catgagaagaataggtgatgtatattttctatttcattgaagcagaaaatgcgggttatgtttaaattatttaccaaattgcttccctctctttgcatac |
206 |
Q |
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| T |
36957701 |
catgagaagaataggtgatgtatattttccatttcattgaagcagaaaacgcgggttatgtttaaattatttaccaaattgcttc--------------c |
36957786 |
T |
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| Q |
207 |
atctccatttcaacttacatagtaaagcatgattaaatagatccaaattttt |
258 |
Q |
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| T |
36957787 |
atattcatttcgacttacatagtagagcatgattaaatagatccaaattttt |
36957838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 4094419 - 4094474
Alignment:
| Q |
17 |
tcacttcattagcaatctcaccttttaacacaatgttaattctcatgttctataac |
72 |
Q |
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| T |
4094419 |
tcactttattagcaatctcacctttgaagacaatgttatttcttatgttccataac |
4094474 |
T |
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