View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19793_low_29 (Length: 257)
Name: NF19793_low_29
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 4007656 - 4007473
Alignment:
| Q |
1 |
cttagagaaagaccagaggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcattcaacaaatggaattgtttgatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4007656 |
cttagagaaagaccagaggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcattcaaaaaatggaattgtttgatt |
4007557 |
T |
|
| Q |
101 |
atattaacaaatggaataggactgtgcttattatcatcctatgtatttcctttcttccagttgaagatgaagaaattgatttaga |
185 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||||||||| ||||| |||| |
|
|
| T |
4007556 |
atatgaacaaatggaataggactgtgcttagtatcatcctatgtatttcc-ctcctacagttgaagatgaagaatttgatctaga |
4007473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 3998588 - 3998451
Alignment:
| Q |
104 |
ttaacaaatggaataggactgtgcttattatcatcctatgtatttcctttcttccagttgaagatgaagaaattgatttagacacaagtctatagtttaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||| || | |||||||||||||||| ||||||||||||||| |||||||| | | |
|
|
| T |
3998588 |
ttaacaaatggaataggactgtgcttagtatcgtcctatgtatttccttcctac-agttgaagatgaagaatttgatttagacacaactctatagtatga |
3998490 |
T |
|
| Q |
204 |
tgcaagtagacacagttaacagttgagttaccaacatta |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3998489 |
tgcaagtagacacagttaacagttgagttaccaacatta |
3998451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 3957881 - 3958089
Alignment:
| Q |
3 |
tagagaaagaccagaggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcattcaacaaatggaattgtttgattat |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| || ||||||| | || || | || | || || || ||||||||||||| ||||||||| |
|
|
| T |
3957881 |
tagagagagaccagaggtggagttaaaagggtttggcatcagacccataatccccttaagagataaaaacatcgttgaacaaatggaattatttgattat |
3957980 |
T |
|
| Q |
103 |
attaacaaatggaataggactgtgcttattatcatcctatgtatttcctttcttccagttgaagatgaagaaattgatttagacacaagtctatagttta |
202 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| ||||||||| ||||| ||| | ||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
3957981 |
gttaacaaatggagtaggactgtgcttagcatcatcatatgtattt-ctttcctccggctgaagatgaagaagttgatttagacacaagtccatagtttg |
3958079 |
T |
|
| Q |
203 |
atgcaagtag |
212 |
Q |
| |
|
||| |||||| |
|
|
| T |
3958080 |
atgtaagtag |
3958089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 3998665 - 3998575
Alignment:
| Q |
1 |
cttagagaaagaccagaggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcattcaacaaatggaat |
91 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3998665 |
cttagagaaagacccgaggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcatttaacaaatggaat |
3998575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 4022808 - 4022682
Alignment:
| Q |
10 |
agaccagaggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcattcaacaaat-ggaattgtttgattatattaac |
108 |
Q |
| |
|
||||||||||| || ||||||||||| || || |||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
4022808 |
agaccagaggttgaattaaaagggttaggaatcagccccataaaccactcaacatataggaatctcattcaacaaatgggaattgtttgattatgttaac |
4022709 |
T |
|
| Q |
109 |
aaatggaataggactgtgcttattatc |
135 |
Q |
| |
|
||||||||||||||||| ||| |||| |
|
|
| T |
4022708 |
caatggaataggactgtggttagtatc |
4022682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 3984740 - 3984567
Alignment:
| Q |
2 |
ttagagaaagaccagaggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcattcaacaaatggaattgtttgatta |
101 |
Q |
| |
|
||||||||||| |||||||| || |||| ||||||||||| ||||| ||||| || ||| |||| | ||| || || | |||||||||||||||||| |
|
|
| T |
3984740 |
ttagagaaagaacagaggtgaagctaaaggggtttggcatcagccctataagtcacacaatatatgacaatttcgttgagcaaatggaattgtttgatcg |
3984641 |
T |
|
| Q |
102 |
tattaacaaatggaataggactg---tgcttattatcatcctatgtatttcctttcttccagttgaagatgaaga |
173 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||||||||||||||||||| | | ||| |||||||||||| |
|
|
| T |
3984640 |
tattaacaaatggaagaggactgtgctgcttagcatcatcctatgtatttccttac-tgcagctgaagatgaaga |
3984567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 3815423 - 3815349
Alignment:
| Q |
17 |
aggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcattcaacaaatggaat |
91 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||| | | ||||||||||| || ||||||||||||||||||| |
|
|
| T |
3815423 |
aggtgaagttaaaagggtttggcatgagccccataaaccagtcaacatatcaaaacctcattcaacaaatggaat |
3815349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 4022677 - 4022605
Alignment:
| Q |
162 |
tgaagatgaagaaattgatttagacacaagtctatagtttaatgcaagtagacacagttaacagttgagttac |
234 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||| || ||| ||||||||||||||||| ||||| |||| |
|
|
| T |
4022677 |
tgaagatgaagaagttgatttagtcacaagtctatagattgatgtaagtagacacagttaacggttgatttac |
4022605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 3999846 - 3999787
Alignment:
| Q |
17 |
aggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctca |
76 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||| |
|
|
| T |
3999846 |
aggtggagttaaaagggtttggcatcagccccataaaccactcaacatatcacaatctca |
3999787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 3922440 - 3922521
Alignment:
| Q |
9 |
aagaccagaggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcattcaacaaatggaa |
90 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| |||||||||| | | |||||||||| ||||| ||||||||||||||| |
|
|
| T |
3922440 |
aagacgagaggtaaagttaaaagggtttggcatgagccccataaaccagtcaacatatcgcaatctaattcaacaaatggaa |
3922521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 3807817 - 3807745
Alignment:
| Q |
19 |
gtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcattcaacaaatggaat |
91 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||| | | ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
3807817 |
gtggaattaaaagggtttggcatgagccctataaaccagtcaacatatcacaatttcattcaacaaatggaat |
3807745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 3935781 - 3935848
Alignment:
| Q |
23 |
agttaaaagggtttggcataagccccataagcaactcaacatatcataatctcattcaacaaatggaa |
90 |
Q |
| |
|
||||||||||||||||||| |||||||||| | | |||||| ||| ||||| ||||||||||||||| |
|
|
| T |
3935781 |
agttaaaagggtttggcatgagccccataaaccagtcaacacatcgcaatctaattcaacaaatggaa |
3935848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 4007473 - 4007438
Alignment:
| Q |
203 |
atgcaagtagacacagttaacagttgagttaccaac |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4007473 |
atgcaagtagacacagttaacagttgagttaccaac |
4007438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 3958139 - 3958192
Alignment:
| Q |
162 |
tgaagatgaagaaattgatttagacacaagtctatagtttaatgcaagtagaca |
215 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
3958139 |
tgaagatgaagaatttgatttacacagaagtctatagtttgatgtaagtagaca |
3958192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University