View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_34 (Length: 246)
Name: NF19793_low_34
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 46489496 - 46489733
Alignment:
| Q |
1 |
taaaatagttgttatgttataagttatatgcctttgttcttgtgnnnnnnnccccttttctttatagatggcgaaatatattattatataggtcatgtga |
100 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46489496 |
taaaatagttgttatgttat--gttatatgccattgttcttgtgtttttttccccttttctttatagatggcgaaatatattattatataggtcaagtga |
46489593 |
T |
|
| Q |
101 |
ctaatggggaaggtaaagtacaagacaaatctaagatgtcgactagatatttttctccctcctctctcttatttctcttttgggaaagccgttgcattgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46489594 |
ctaatggggaaggtaaagtacaagacaaatctaagatgtcgactagatatttttctccctcctctctcttatttctcttttgggaaagccgttgcattgc |
46489693 |
T |
|
| Q |
201 |
acttccatacttctattacatcattttattttatattctt |
240 |
Q |
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||||||||||||||||||| |||||||||||||| ||||| |
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| T |
46489694 |
acttccatacttctattacttcattttattttattttctt |
46489733 |
T |
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