View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19793_low_37 (Length: 238)
Name: NF19793_low_37
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 41017040 - 41016834
Alignment:
| Q |
20 |
tattattaattgaataagggtttttcagttctgccgcagtaccattctattgcgttgatggagcttggaactgagaagagttcagaaacagagtcaaaga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41017040 |
tattattaattgaataagggtttttcagttctgccgcagtaccattctattgcgttgatggagcttggaactgagaaaagttcagaaacagagtcaaaga |
41016941 |
T |
|
| Q |
120 |
agaaatcaaagggtttgaatattgaaggataccaagttgagggtttatcaattggaggacatgaaacttgtgttattttttccaactttagagttgcttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41016940 |
agaaatcaaagggtttgaatattgaaggataccaagttgagggtttatcaattggaggacatgaaacttgtgttattttttccaactttagagttgcttt |
41016841 |
T |
|
| Q |
220 |
tgatatt |
226 |
Q |
| |
|
||||||| |
|
|
| T |
41016840 |
tgatatt |
41016834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 55 - 226
Target Start/End: Complemental strand, 41018763 - 41018577
Alignment:
| Q |
55 |
gcagtaccattctattgcgttgatggagcttggaactgagaaga---------------gttcagaaacagagtcaaagaagaaatcaaagggtttgaat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41018763 |
gcagtaccattctattgcgttgatggagcttggaactgagaagaagttaaagtcaggaagttcagaaacagagtcaaagaagaaatcaaagggtttgaat |
41018664 |
T |
|
| Q |
140 |
attgaaggataccaagttgagggtttatcaattggaggacatgaaacttgtgttattttttccaactttagagttgcttttgatatt |
226 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41018663 |
attgaaggataccaagttgagagtttatcaattggaggacatgaaatttgtgttattttttccaactttagaattgcttttgatatt |
41018577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 55 - 226
Target Start/End: Complemental strand, 12114785 - 12114614
Alignment:
| Q |
55 |
gcagtaccattctattgcgttgatggagcttggaactgagaagagttcagaaacagagtcaaagaagaaatcaaagggtttgaatattgaaggataccaa |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12114785 |
gcagtaccattctattgcgttgatggagcttagaactgagaaaagttcagaaacagagtcaaagaagaaatcaaagggtttgaatattgaaggataccaa |
12114686 |
T |
|
| Q |
155 |
gttgagggtttatcaattggaggacatgaaacttgtgttattttttccaactttagagttgcttttgatatt |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12114685 |
gttgagggtttatcaattggaggacatgaaacttgtgttattttttcacactttagagttgcttttgatatt |
12114614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University