View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_38 (Length: 237)
Name: NF19793_low_38
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 52173680 - 52173900
Alignment:
| Q |
1 |
tttcttttctttacataaattcaggtgtttcaggatctggagcaacagtattcttcattattcttattattatggttatttgtcaccttaaaaggagtac |
100 |
Q |
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| T |
52173680 |
tttcttttctttacataaattcaggtgtttcaggatctggagcaacagtattcttcattattcttattattatggttatttgtcaccttaaaaggagtac |
52173779 |
T |
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| Q |
101 |
atctggacaacaaagtattttcagaaagaaacgaaaacttgttgaccacaatttcgaggttttcatgcaaagttatgaatcatctatgccaagaagatat |
200 |
Q |
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| T |
52173780 |
atctggacaacaaagtattttcagaaagaaacgaaaacttgttgaccacaatgtcgaggttttcatgcaaagttatgaatcatctatgccaagaagatat |
52173879 |
T |
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| Q |
201 |
agttatagagaaataaaaagg |
221 |
Q |
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| T |
52173880 |
agttatagagaaataaaaagg |
52173900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 31605412 - 31605305
Alignment:
| Q |
114 |
agtattttcagaaagaaacgaaaacttgttgaccacaatttcgaggttttcatgcaaagttatgaatcatctatgccaagaagatatagttatagagaaa |
213 |
Q |
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| T |
31605412 |
agtattttcaggaaaagaagaaaagttgttgaccacaatgtagaagttttcatgcaaagttataattcatctatgccaagaagatatagttataaagaaa |
31605313 |
T |
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| Q |
214 |
taaaaagg |
221 |
Q |
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|||||||| |
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| T |
31605312 |
taaaaagg |
31605305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 31615261 - 31615173
Alignment:
| Q |
133 |
gaaaacttgttgaccacaatttcgaggttttcatgcaaagttatgaatcatctatgccaagaagatatagttatagagaaataaaaagg |
221 |
Q |
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| T |
31615261 |
gaaaagttgttaaccacaatgtagaggttttcatgcgaaattataattcatctatcccaagaagatatagttatacagaagtaaaaagg |
31615173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 31586153 - 31586051
Alignment:
| Q |
116 |
tattttcagaaagaaacgaaaacttgttgaccacaatttcgaggttttcatgcaaagttatgaatcatctatgccaagaagatatagttatagagaaata |
215 |
Q |
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| T |
31586153 |
tattttcagaaaaagaagaaaactggttgaccacaatgtggaggttttcatgcaaagttataagttatcaatgcc---aagatatagttacacagaagta |
31586057 |
T |
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| Q |
216 |
aaaagg |
221 |
Q |
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|||||| |
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| T |
31586056 |
aaaagg |
31586051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 31618994 - 31618924
Alignment:
| Q |
136 |
aacttgttgaccacaatttcgaggttttcatgcaaagttatgaatcatctatgccaagaagatatagttat |
206 |
Q |
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||||||||||| ||||| | ||||||||||||| ||| || | | ||| ||||||||||||||||||||| |
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| T |
31618994 |
aacttgttgacaacaatgtggaggttttcatgcgcagtcataatttatccatgccaagaagatatagttat |
31618924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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