View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_39 (Length: 236)
Name: NF19793_low_39
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7746101 - 7746323
Alignment:
| Q |
1 |
attttattatcagaagccttcttagtaaaatctctaacaagtggtttgaagatggaactatgtaacacagtgaagttcttcactgtgctaagttttgttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7746101 |
attttattatcagaagccttcttagtaaaatctctaacaagtggtttgaatatggaactatgtaacacagtgaagttcttcactgtgctaagttttgttc |
7746200 |
T |
|
| Q |
101 |
caccatttcccttattgtcaatggacaaaatggaagacttaaagctaacaatttcaccaccaactttaattgatttcacatcaatgaaatattcataaga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7746201 |
caccatttcccttattgtcaatggacaaaatggaagacttaaagctaacaatttcaccaccaactttaattgatttcacatcaatgaaatattcataaga |
7746300 |
T |
|
| Q |
201 |
agcatcaccttgggaaaatattg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
7746301 |
agcatcaccttgggaaaatattg |
7746323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7733801 - 7733579
Alignment:
| Q |
1 |
attttattatcagaagccttcttagtaaaatctctaacaagtggtttgaagatggaactatgtaacacagtgaagttcttcactgtgctaagttttgttc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||| |
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| T |
7733801 |
atttttttatcagaagccttcttagtaaaatctctaacaagtggtttgaatatggaactatgcaacacagtgaaggacttcattgtgctaagttttgttc |
7733702 |
T |
|
| Q |
101 |
caccatttcccttattgtcaatggacaaaatggaagacttaaagctaacaatttcaccaccaactttaattgatttcacatcaatgaaatattcataaga |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||| | || ||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
7733701 |
caccatttcccttattgtcaatggacaaaagggaagacttgaagctcagaacttcaccaccaactttaattgatttcacatcaataaagtattcataaga |
7733602 |
T |
|
| Q |
201 |
agcatcaccttgggaaaatattg |
223 |
Q |
| |
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||||||||| | || |||||||| |
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| T |
7733601 |
agcatcaccatcggtaaatattg |
7733579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 7711491 - 7711281
Alignment:
| Q |
1 |
attttattatcagaagccttcttagtaaaatctctaacaagtggtttgaagatggaactatgtaacacagtgaagttcttcactgtgctaagttttgttc |
100 |
Q |
| |
|
||||| |||||||| ||||||||| |||||||||||||||||||||| || ||||||||||| |||||||||||| ||||| ||||||||||||||||| |
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| T |
7711491 |
atttttttatcagaggccttcttattaaaatctctaacaagtggtttcaatatggaactatgaaacacagtgaaggacttcattgtgctaagttttgttc |
7711392 |
T |
|
| Q |
101 |
caccatttcccttattgtcaatggacaaaatggaagacttaaagctaacaatttcaccaccaactttaattgatttcacatcaatgaaatattcataaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||| ||||| | || ||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
7711391 |
caccatttcccttattgtcaatggacaaaagggaggacttgaagctcagaacttcaccaccaactttaattgatttcacatcaataaagtattcataaga |
7711292 |
T |
|
| Q |
201 |
agcatcacctt |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
7711291 |
agcatcacctt |
7711281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7726379 - 7726157
Alignment:
| Q |
1 |
attttattatcagaagccttcttagtaaaatctctaacaagtggtttgaagatggaactatgtaacacagtgaagttcttcactgtgctaagttttgttc |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||| |||| ||||||||||||||||| |
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|
| T |
7726379 |
atttttttatcagaagccttcttagtaaaatctctaacaagtggtttcagtatggaactatgcaaaacagtgaagggattcattgtgctaagttttgttc |
7726280 |
T |
|
| Q |
101 |
caccatttcccttattgtcaatggacaaaatggaagacttaaagctaacaatttcaccaccaactttaattgatttcacatcaatgaaatattcataaga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||| ||| | | || ||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
7726279 |
cgccatttcccttattgtcaatggacaaaagggaagacttgaagttcagaacttcaccaccaactttaattgatttcacatcaataaagtattcataaga |
7726180 |
T |
|
| Q |
201 |
agcatcaccttgggaaaatattg |
223 |
Q |
| |
|
||||||||||| || |||||||| |
|
|
| T |
7726179 |
agcatcaccttcggtaaatattg |
7726157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 85 - 211
Target Start/End: Complemental strand, 7699384 - 7699258
Alignment:
| Q |
85 |
gtgctaagttttgttccaccatttcccttattgtcaatggacaaaatggaagacttaaagctaacaatttcaccaccaactttaattgatttcacatcaa |
184 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
7699384 |
gtgctaatttttgtcccaccatttcccttattgtcaatggacaaaagggaagacttaaagttaagaatttcaccaccaactttaattgatttcacatcaa |
7699285 |
T |
|
| Q |
185 |
tgaaatattcataagaagcatcacctt |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
7699284 |
tgaaatattcataagaagcatcacctt |
7699258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 7704120 - 7703964
Alignment:
| Q |
55 |
gaactatgtaacacagtgaagttcttcactgtgctaagttttgttccaccatttcccttattgtcaatggacaaaatggaagacttaaagctaacaattt |
154 |
Q |
| |
|
|||||||| ||||| |||||| ||||| ||| ||| |||||||||||||| | |||||||||| |||| ||||||||||||||||||| | | || || |
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| T |
7704120 |
gaactatgcaacactgtgaaggacttcatggtggtaaattttgttccaccatattccttattgtccatgggcaaaatggaagacttaaagttgagaactt |
7704021 |
T |
|
| Q |
155 |
caccaccaactttaattgatttcacatcaatgaaatattcataagaagcatcacctt |
211 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
7704020 |
tgcaaccaactttaattgatttcacatcaattaaatattcataaaaagcatcacctt |
7703964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 206
Target Start/End: Complemental strand, 7749546 - 7749428
Alignment:
| Q |
88 |
ctaagttttgttccaccatttcccttattgtcaatggacaaaatggaagacttaaagctaacaatttcaccaccaactttaattgatttcacatcaatga |
187 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||||||||| |||||| ||| | | | | ||| ||| ||| ||||||| |||||||||| |||| |
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|
| T |
7749546 |
ctaatttttgttccacattttcccttgttgtcaatggacaaaagagaagacctaatgttgagacttttgccagcaattttaatttatttcacatctatga |
7749447 |
T |
|
| Q |
188 |
aatattcataagaagcatc |
206 |
Q |
| |
|
| || |||||||||||||| |
|
|
| T |
7749446 |
agtactcataagaagcatc |
7749428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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