View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_4 (Length: 486)
Name: NF19793_low_4
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 23362598 - 23363077
Alignment:
| Q |
1 |
atgtccaagaatattttcacaatgttctgggtcggaaaactccgcgttattctttcagcttattatttcaagaactatcactccataactaaagacatcc |
100 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23362598 |
atgtccaagaagattttcgcaatgttctgggtcggaaaactcctcgttattctttcagcttattatttcaagaactatcactccataactaaagacatcc |
23362697 |
T |
|
| Q |
101 |
gattacatcgagaaacttccacgcatagcatactc---agg---------actgaaaaatatgaagttgaaactaaaattggtgacaaagtaatcttcta |
188 |
Q |
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||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23362698 |
gattacatcgagaaacttccacgtatagcatactcggaaggcatctatccactgaaaaatatgaagttgaaattaaaattggtgacaaagtaatcttcta |
23362797 |
T |
|
| Q |
189 |
aggacataaaatttctagatatgacatggtgattggtaacaatacaatctcatataccataataagaaactcacttactaggttccagccactctctttg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23362798 |
aggacataaaatttctagatatgacatggtgattggtaacaatacaatctcatataccataataagaaactcacttactaggttccagccactctctttg |
23362897 |
T |
|
| Q |
289 |
tatttgcctcaacatgatctcccaacaatgttcgcactagatggaagtctgaaatttttggaaccctagagattaaacaagtcagaatgcaaattaagca |
388 |
Q |
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||||||||||||||| |||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
23362898 |
tatttgcctcaacatcatctcccaacaatgtttgcgctagacggaagtctgaaatttttggatccctagagattaaacaagtcagaaagcaaattaagca |
23362997 |
T |
|
| Q |
389 |
ctataaagaaaataactccctactagattaataagtgtttagaaaagttttgtaatctcatatactattatgaagtactt |
468 |
Q |
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| T |
23362998 |
ctataaagaaaataactccctactagattaataagtgtttagaaaagttttgtaatctcatatactattatgaagtactt |
23363077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 23349176 - 23348700
Alignment:
| Q |
1 |
atgtccaagaatattttcacaatgttctgggtcggaaaactccgcgttattctttcagcttattatttcaagaactatcactccataactaaagacatcc |
100 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23349176 |
atgtccaagaagattttcgcaatgttctgggtcggaaaactcctcgttattctttcagcttattatttcaagaactatcactccataacta--gacatcc |
23349079 |
T |
|
| Q |
101 |
gattacatcgagaaacttccacgcatagcatactc---agg---------actgaaaaatatgaagttgaaactaaaattggtgacaaagtaatcttcta |
188 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23349078 |
gattacatcgagaaacttccacgtatagcatactcggaaggcatctatccactgaaaaatatgaagttgaaactaaaattggtgacaaagtaatcttcta |
23348979 |
T |
|
| Q |
189 |
aggacataaaatttctagatatgacatggtgattggtaacaatacaatctcatataccataataagaaactcacttactaggttccagccactctctttg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23348978 |
aggacataaaatttctagatatgacatggtgattggtaacaatacaatgccatataccataataagaaactcacttactaggttccagcca--ctctttg |
23348881 |
T |
|
| Q |
289 |
tatttgcctcaacatgatctcccaacaatgttcgcactagatgg-aagtctgaaatttttggaaccctagagattaaacaagtcagaatgcaaattaagc |
387 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23348880 |
tatttgcctcagcatgatctcccaacaatgttcgcgctagacggaaagtctgaaatttttggaaccctagagattaaacaagccagaatgcaaattaagc |
23348781 |
T |
|
| Q |
388 |
actataaagaaaataactccctactagattaataagtgtttagaaaagttttgtaatctcatatactattatgaagtactt |
468 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
23348780 |
actataaagaaaataactccctactagattaataagtatttagaaaagtcttgtaatctcatatactattatgaagtactt |
23348700 |
T |
|
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