View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_45 (Length: 224)
Name: NF19793_low_45
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 33386764 - 33386950
Alignment:
| Q |
17 |
caactaccaagccaatttgttttcaaacaattatgaaagaaccttatatagttatatttcaagtccccttcaacaatcaacttgattctagattattatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| || | |
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| T |
33386764 |
caactaccaagccaatttgttttcaaacaattatgaaagaaccttatat--------ttcaagtcaccttcaacaatcaacttgattctggattttt--t |
33386853 |
T |
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| Q |
117 |
ttttagcaaatgtgctctctttaattctcaagtttcgccaaaaccctccatttctcaattgctccttcggacaaaaggaacctattgattcttctca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
33386854 |
ttttagcaaatgtgctctctttaattctcaagtttcgccaaaaccctccatttctcaattgctccttcagacaaaaggaacctattgattctgctca |
33386950 |
T |
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