View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_46 (Length: 220)
Name: NF19793_low_46
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 33918698 - 33918510
Alignment:
| Q |
16 |
cataggatccgacatcgtacctccatcttttgatccaacaacaaacgtagaatccaaagacattctcatctcaaaagaccaaaacatatcagccagaatc |
115 |
Q |
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| T |
33918698 |
cataggatccgacatcgtacctccatcttttgatccaacaacaaacgtagaatccaaagacattctcatctcaaaagaccaaaacatatcagccagaatc |
33918599 |
T |
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| Q |
116 |
ttcattcccaaactcaacaacgatcaatttccaaaccaaaaactccctctccttgtttacttccatggtggtggtttctgcgtagaaac |
204 |
Q |
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| T |
33918598 |
ttcattcccaaactcaacaacgatcaatttccaaaccaaaaactccctctccttgtttacttccatggtggtggtttctgcgtagaaac |
33918510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 33901762 - 33901821
Alignment:
| Q |
146 |
ccaaaccaaaaactccctctccttgtttacttccatggtggtggtttctgcgtagaaact |
205 |
Q |
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| T |
33901762 |
ccaacccaaaaactccctcttcttgtttacatccatggtggtgctttctgcattgaaact |
33901821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 33897089 - 33897039
Alignment:
| Q |
146 |
ccaaaccaaaaactccctctccttgtttacttccatggtggtggtttctgc |
196 |
Q |
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| T |
33897089 |
ccaatccaaaaactccctgtctttgtctacttccatggtggtggtttctgc |
33897039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 19643172 - 19642987
Alignment:
| Q |
19 |
aggatccgacatcgtacctccatcttttgatccaacaacaaacgtagaatccaaagacattctcatctcaaaagaccaaaacatatcagccagaatcttc |
118 |
Q |
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| T |
19643172 |
aggatccgacatcgtacctccatcttttgattcaacaacaaacgtagaatccaaagacgttttcatctcaaaagcccaaaacatatcagccagaatcttc |
19643073 |
T |
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| Q |
119 |
attcccaaactcaacaacgatcaatttccaaaccaaaaactccctctccttgtttacttccatggtggtggtttctgcgtagaaac |
204 |
Q |
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| T |
19643072 |
attcccatacccaacaacgatgaatttccaaaccaaaaactccctctccttgtttacttccacggtggtggtttctgcgtagaaac |
19642987 |
T |
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