View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_47 (Length: 215)
Name: NF19793_low_47
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 32756541 - 32756357
Alignment:
| Q |
13 |
aacaatatatccttcaagatacagggtttatgctccaaccaaattcataatatcattggcacaaatcacacattgacttaaaatttagaaactggcctgt |
112 |
Q |
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| T |
32756541 |
aacaaaatatccttcaagatacagggtttatgctccaaccaaattcataatatcattggcacaaatcacacgttgacttaaaatttagaaactggcctgt |
32756442 |
T |
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| Q |
113 |
atcacacattggcttttaaaaacttgcctcttcagttccacttctaagtattgaccaaaaaggatgaacaagaaatgtacatgtc |
197 |
Q |
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| T |
32756441 |
atcacacattggcttttaaaaactggcctcttcagttccacttctaagtattgacctaaaaggatgaacaagaaatgtacatgtc |
32756357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 32766921 - 32766737
Alignment:
| Q |
13 |
aacaatatatccttcaagatacagggtttatgctccaaccaaattcataatatcattggcacaaatcacacattgacttaaaatttagaaactggcctgt |
112 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32766921 |
aacaaaatatccttcaagatacagggtttatgctccaaccaaattcataatatcattggcacaaatcacacgttgacttaaaatttagaaactggcctgt |
32766822 |
T |
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| Q |
113 |
atcacacattggcttttaaaaacttgcctcttcagttccacttctaagtattgaccaaaaaggatgaacaagaaatgtacatgtc |
197 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32766821 |
atcacacattggcttttaaaaactggcctcttcagttccacttctaagtattgacctaaaaggatgaacaagaaatgtacatgtc |
32766737 |
T |
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