View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_5 (Length: 443)
Name: NF19793_low_5
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 51335355 - 51335758
Alignment:
| Q |
19 |
aaacattccttccttgagctccaatattaagcctactatgttgtttccttaattctacgtgtcttgtggcagttaagcatttgattacacccatgttagc |
118 |
Q |
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| T |
51335355 |
aaacattccttccttgagctccaatattaagcctactatgttgtttccttaattctacgtgtcttgtggcagttaagcatttgattacacccatgttagc |
51335454 |
T |
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| Q |
119 |
tttgtctctgc--------tttcaatgaattttcggatattgtttttcgtgcgtagaaacacatggagtgcttttacgtaactagattgaaggagttcgt |
210 |
Q |
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| T |
51335455 |
tttgtctctgcccaagttgtttcaatgaattttcggatattgtttttcgtgcgtagaaacacatggagtgcttttacgtaactagattgaaggagttcgt |
51335554 |
T |
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| Q |
211 |
gtcaacattttatttgctcgacaaagatttcaacatgctgatttggaatgtaaccattacgtagnnnnnnnnnnnnnnnaacaaaccattgggtaactaa |
310 |
Q |
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| T |
51335555 |
gtcaacattttatttgctcgacaaagatttcaacatgctgatttggaatgtaaccattacttag-ttttttctatttttaacaaaccattaggtaactaa |
51335653 |
T |
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| Q |
311 |
tagtatcccaaataatgnnnnnnncaaggacctgttaacgagtgttttcgaaacactctttaaaatattaattgcatgtcgtttttaagagtttgtctat |
410 |
Q |
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| T |
51335654 |
tagtatcccaaataatgttt------------ttttaactagtgttttcgaaacactatttaaagtattgattacatgtc-tttttaagagtttgt---- |
51335736 |
T |
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| Q |
411 |
cctatgcaaaattgcaacttctt |
433 |
Q |
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| T |
51335737 |
-ctatgcaaaattgcaacttctt |
51335758 |
T |
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