View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19793_low_8 (Length: 429)
Name: NF19793_low_8
Description: NF19793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19793_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 128 - 413
Target Start/End: Original strand, 40758314 - 40758587
Alignment:
| Q |
128 |
taagcattgtgatattattgatgttgaaagaactgttatgctgatgttatttataccgaaagaataatgtatacacaaggaatctattttcaatagattt |
227 |
Q |
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| T |
40758314 |
taagcattgtgatattattgatgttgaaagaattgttatgctgatgttatttatactgaaagaataatgtatacacaaggaatctattttcaatagattt |
40758413 |
T |
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| Q |
228 |
aacattaaaatattacaatggaaaatccagtcaaattttgtgcaagaccgcagtagtaactatagcagaaaaagcgcagcaacatcctcaagcacaagac |
327 |
Q |
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| T |
40758414 |
aacattaaaatattacaatggaaaatccagtcaaattttgtgcaagaccgcagtagtaactatagcagaaaaagcgcagcaacatcctcaagcacaagac |
40758513 |
T |
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| Q |
328 |
tgcagcagccaaattctacaccagaagcaaaaaagcagctgccgattaagttaacgaagcttctgttaacattatgataagaaagt |
413 |
Q |
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| T |
40758514 |
tgcagcagccaaattctacaccagaagcaaaaaagcagctgccga------------agcttctgttaacattatgataagaaagt |
40758587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 40758200 - 40758262
Alignment:
| Q |
14 |
catcatgaatacaatatgaatcagagagacatcagacatgagataaatgatcaaaccactgcc |
76 |
Q |
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| T |
40758200 |
catcatgaatataatatgaatcatagagacatcagacatgagatgaatgatcaaaccactgcc |
40758262 |
T |
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