View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19794_high_1 (Length: 568)
Name: NF19794_high_1
Description: NF19794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19794_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 549
Target Start/End: Complemental strand, 11861378 - 11860840
Alignment:
| Q |
11 |
agtgagatgaagtttttgagccatttttctgggggagaatgctcgatgcgctcaattaccatggacttcaatttggagaaggatttcaattgtgaattag |
110 |
Q |
| |
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||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11861378 |
agtgaaatgaagtttttgagccatctttctggtggagaatggtcgatgcgctcaactaccatggacttcaatttggagaagggtttcaattgtgaattag |
11861279 |
T |
|
| Q |
111 |
aagttttgatttcaggagcagtgtaatccattgtatccttcattgatattatgttcgactccaccataacgagctcatcatcaagcccaggatatagcgg |
210 |
Q |
| |
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||||||||||||||||||||| ||| | ||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| || |||||||| || |
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| T |
11861278 |
aagttttgatttcaggagcagcgtacttcattgtatccttcattgatattacgctcgactccaccacaacgagctcatcatcaagaccgggatatagtgg |
11861179 |
T |
|
| Q |
211 |
catgtaagctaacttggggcaatattgaacattgagctttgaaatgcaactgaaatatggtctatcttctaccggtattttattttcccaccaacctact |
310 |
Q |
| |
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|||| ||||||||| || |||||||| | ||| ||||||||||||||||||||| |||||||||| | | || |||| | ||||||||||||| | | |
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| T |
11861178 |
catggaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatcattttcccgtatgtctttttcccaccaacttttt |
11861079 |
T |
|
| Q |
311 |
agattaggacaatccgagatggtaagttccttcaaggatggaaagaatatcgatgtatcagcttgattgttctttgtaatgaattttaaagagtccaatc |
410 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||||||||||||| | | ||||| || |||||||||| || ||||||||| ||||||||||||| |
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|
| T |
11861078 |
agattaggacaatctgagattgcaagttccttcaaggatggaaagaattttggtgtattagtgtgattgttctctgcaatgaatttcaaagagtccaatc |
11860979 |
T |
|
| Q |
411 |
tccgaagttggagaaccttgagaccaggaagctgatccattggtgggagaaattcgcaattgggacagtcgttcaaggtaaacttaacaaggaattgaag |
510 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
11860978 |
tccgaagttggagaaccttgagatgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaatttaccaaggaattgaag |
11860879 |
T |
|
| Q |
511 |
tgaagcgagccaattaaacaacatttggccatggtaccc |
549 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
11860878 |
tgaagcgagccaattagacaacatgtggccatggtaccc |
11860840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 11 - 531
Target Start/End: Complemental strand, 11829252 - 11828726
Alignment:
| Q |
11 |
agtgagatgaagtttttgagccatttttctgggggagaatgctcgatgcgctcaattaccatggacttcaatttggagaaggatttcaattgtgaattag |
110 |
Q |
| |
|
||||| ||||||||||| ||||| | ||||| ||||| || || ||||||||||||||||||||||||||||| ||||||| || |||||||| ||| |
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|
| T |
11829252 |
agtgaaatgaagtttttaagccaactctctggtggagattggtcaatgcgctcaattaccatggacttcaatttcgagaagggttgtgattgtgaactag |
11829153 |
T |
|
| Q |
111 |
aagttt---tgatttcaggag---cagtgtaatccattgtatccttcattgatattatgttcgactccaccataacgagctcatcatcaagcccaggata |
204 |
Q |
| |
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| |||| || |||||| | ||| |||| |||||||||| |||||||| ||| |||||||||||||| |||||||||||||||||| || ||||| |
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|
| T |
11829152 |
atgtttcagtgctttcagtactgtcagcataatgcattgtatccctcattgatcttacgttcgactccaccagaacgagctcatcatcaagaccgggata |
11829053 |
T |
|
| Q |
205 |
tagcggcatgtaagctaacttggggcaatattgaacattgagctttgaaatgcaactgaaatatggtctatcttctaccggtattttattttcccaccaa |
304 |
Q |
| |
|
||| ||||| ||||||| | || || ||||| | ||| ||||||||||||||||||||| |||||||||| | || ||| | ||||||||||||| |
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|
| T |
11829052 |
gagcagcatgcaagctaattgaggacagtattggatatttagctttgaaatgcaactgaaagatggtctatcattgtcccatatgtcattttcccaccaa |
11828953 |
T |
|
| Q |
305 |
cctactagattaggacaatccgagatggtaagttccttcaaggatggaaagaatatcgatgtatcagcttgattgttctttgtaatgaattttaaagagt |
404 |
Q |
| |
|
||| ||| ||| ||||||| ||||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||| ||||||| |
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|
| T |
11828952 |
ccttttagtttaagacaatctgagattgttagttccttcaaggatggaaagaatataggtgtatcagcttgattgttctttgcaataaatttcaaagagt |
11828853 |
T |
|
| Q |
405 |
ccaatctccgaagttggagaaccttgagaccaggaagctgatccattggtgggagaaattcgcaattgggacagtcgttcaaggtaaacttaacaaggaa |
504 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |
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| T |
11828852 |
ccaatctccgaagttggagaaccttgagatgtggaagctcatccattggtgggagaaattcgcatttgggacagtcattcaaggtaaacttaacaaggca |
11828753 |
T |
|
| Q |
505 |
ttgaagtgaagcgagccaattaaacaa |
531 |
Q |
| |
|
|||||||||||||||||| ||| |||| |
|
|
| T |
11828752 |
ttgaagtgaagcgagccagttagacaa |
11828726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 11 - 359
Target Start/End: Complemental strand, 12040173 - 12039819
Alignment:
| Q |
11 |
agtgagatgaagtttttgagccatttttctgggggagaatgctcgatgcgctcaattaccatggacttcaatttggagaaggatttcaattgtgaattag |
110 |
Q |
| |
|
||||| ||||||||||| |||||| | | || ||||| || || || |||||||||||||||||||||||||||||||||| || |||||||||||| |
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|
| T |
12040173 |
agtgaaatgaagtttttaagccatctcttcggtggagattggtcaatacgctcaattaccatggacttcaatttggagaagggttgtgattgtgaattag |
12040074 |
T |
|
| Q |
111 |
aagttt---tgatttcaggag---cagtgtaatccattgtatccttcattgatattatgttcgactccaccataacgagctcatcatcaagcccaggata |
204 |
Q |
| |
|
|| ||| || |||| | | ||| |||| |||||||||| ||||||| ||| ||| |||||||||| |||||||||||||||||| |||||| |
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|
| T |
12040073 |
aattttcagtgctttcggtactgtcagcataatgcattgtatccctcattgaccttacgtttgactccaccagaacgagctcatcatcaagattaggata |
12039974 |
T |
|
| Q |
205 |
tagcggcatgtaagctaacttggggcaatattgaacattgagctttgaaatgcaactgaaatatggtctatcttctaccggtattttattttcccaccaa |
304 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| ||||| || || ||||||||||||||| |||||||||| | || ||| | | ||||||||||| |
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|
| T |
12039973 |
tagtggcatgcaagctaacttggggcaatattggacatttagtttggaaatgcaactgaaagatggtctatcattatcccatatctcagtttcccaccaa |
12039874 |
T |
|
| Q |
305 |
cctactagattaggacaatccgagatggtaagttccttcaaggatggaaagaata |
359 |
Q |
| |
|
| |||||| |||||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
12039873 |
ctgtttagatttggacaatccgagattgtaagttccttcaaggatggaaaaaata |
12039819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 139 - 354
Target Start/End: Original strand, 11901262 - 11901477
Alignment:
| Q |
139 |
cattgtatccttcattgatattatgttcgactccaccataacgagctcatcatcaagcccaggatatagcggcatgtaagctaacttggggcaatattga |
238 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||||| | ||| |||||||||||||| ||||||||||| |||||| ||||||| || || ||| |||| |
|
|
| T |
11901262 |
cattgtatccctcattgatcttacgttcgactccacaagaacaagctcatcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattgg |
11901361 |
T |
|
| Q |
239 |
acattgagctttgaaatgcaactgaaatatggtctatcttctaccggtattttattttcccaccaacctactagattaggacaatccgagatggtaagtt |
338 |
Q |
| |
|
| || || ||||||||||||||||||||||||||||| | || || | |||||||||||||| | ||||||||||||||||| || ||||||| |
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|
| T |
11901362 |
atgtttagttttgaaatgcaactgaaatatggtctatcattaccccaaatctcattttcccaccaacttttcagattaggacaatccgaaattgtaagtt |
11901461 |
T |
|
| Q |
339 |
ccttcaaggatggaaa |
354 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11901462 |
ccttcaaggatggaaa |
11901477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 372 - 501
Target Start/End: Original strand, 11901516 - 11901645
Alignment:
| Q |
372 |
cttgattgttctttgtaatgaattttaaagagtccaatctccgaagttggagaaccttgagaccaggaagctgatccattggtgggagaaattcgcaatt |
471 |
Q |
| |
|
|||||||||| | || ||||||||| | |||||||| |||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| || |
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| T |
11901516 |
cttgattgttttctgcaatgaatttcagagagtccagtctccgaatttggagaaccttgagatgtggaagctgatccattggggggagaaactcgcattt |
11901615 |
T |
|
| Q |
472 |
gggacagtcgttcaaggtaaacttaacaag |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11901616 |
gggacagtcgttcaaggtaaacttaacaag |
11901645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 372 - 514
Target Start/End: Complemental strand, 12039785 - 12039643
Alignment:
| Q |
372 |
cttgattgttctttgtaatgaattttaaagagtccaatctccgaagttggagaaccttgagaccaggaagctgatccattggtgggagaaattcgcaatt |
471 |
Q |
| |
|
|||||||||| |||| ||||||||| | |||||||| || ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| || |
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|
| T |
12039785 |
cttgattgttttttgcaatgaatttcagtgagtccaaccttcgaagttggagaaccttgagatgtggaagctcatccattggcgggagaaattcgcattt |
12039686 |
T |
|
| Q |
472 |
gggacagtcgttcaaggtaaacttaacaaggaattgaagtgaa |
514 |
Q |
| |
|
|| ||||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
12039685 |
tgggcagtcattcaaggtaaacttaacaagacaatgaagtgaa |
12039643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 522
Target Start/End: Complemental strand, 11732657 - 11732539
Alignment:
| Q |
404 |
tccaatctccgaagttggagaaccttgagaccaggaagctgatccattggtgggagaaattcgcaattgggacagtcgttcaaggtaaacttaacaagga |
503 |
Q |
| |
|
||||| |||||||| |||||| |||||||| ||||| ||||| ||||| || ||||||| ||| || |||||||| |||||||||||||||||||| |
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|
| T |
11732657 |
tccaacctccgaagatggagagccttgagatttggaaggtgatcgattggcggtagaaatttgcatttaggacagtcactcaaggtaaacttaacaaggc |
11732558 |
T |
|
| Q |
504 |
attgaagtgaagcgagcca |
522 |
Q |
| |
|
||||||| ||| ||||||| |
|
|
| T |
11732557 |
attgaagcgaatcgagcca |
11732539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 11732790 - 11732724
Alignment:
| Q |
292 |
attttcccaccaacctactagattaggacaatccgagatggtaagttccttcaaggatggaaagaat |
358 |
Q |
| |
|
|||||||||||||| | | || |||||||||||||| || ||||| |||||||||| |||||||||| |
|
|
| T |
11732790 |
attttcccaccaactttcgagtttaggacaatccgaaattgtaagctccttcaaggctggaaagaat |
11732724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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